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The map label for this gene is ycgF [H]

Identifier: 52784190

GI number: 52784190

Start: 345008

End: 345649

Strand: Direct

Name: ycgF [H]

Synonym: BLi00368

Alternate gene names: 52784190

Gene position: 345008-345649 (Clockwise)

Preceding gene: 52784189

Following gene: 52784192

Centisome position: 8.17

GC content: 49.38

Gene sequence:

>642_bases
ATGTTGAACATCTTCCTGAGCTATGTGTTTTTGGGTTTGTCATTGGCCGCACCAGTCGGACCTGTGAATGCCGCGCAGAT
CGACAGAGGCATGAAAGGCGGATTCTTTCATGCCTGGCTGTTTGGCCTTGGCGCTGTAACGGCGGATGTCCTATATATGG
CTTTAATCTACTTTGGAGTTGCGCAATTTTTGACAGCGCCATTCTTAAAAACGTTTTTATGGCTGTTTGGTTTTTTTGTT
TTGACCTATACGGGGATCGAGAGCCTGGTCAAGGCGAAGGAAGTATCGCTGATGAGAGGTGCGGGAGAGAAAGGGTCATA
CCGCAAATCTTTTTTGTCGGGGCTGGTAATCTCCCTTTCAAACCCGCTGAGCATCATGTTCTGGCTCGGCATTTACGGAA
GCATTTTGGCGAAAACGGTAGAGGCGTACGAATCATACCAGCTGCTGATCTGCAGTTCAGGCATTTTAATCGGACTTTTT
CTGTGGGACTTGGCCATGTCTTTTCTAGCCGGGACATTCAGAACATTTTTAAGCCCGCGGATGATCCAGGGAACGACTTG
GCTCGCGGGCATCAGTCTGATCGTATTTGGATGCTACTTCGGCTATCAGGGAATTCTCGAACTGCTGCAGGCGGGGCGCT
GA

Upstream 100 bases:

>100_bases
GCCTTTTCCCATTGCGGGAAAAGGCTTTTTAAGCTGCTTGTTCTATCATGTCCTCTTTTTGAATACATTGTACAAGTTAT
CCGCGGAAGGGGGACGCGAT

Downstream 100 bases:

>100_bases
TCATGTCTGCCCGTTTTTCTCTTCCTGATCCGCCCACTTTTTTTTCATGAGCATCGTCACAGCAGCAATAACGGCAAGAA
AGAGAAGGCTCACAAAAAAA

Product: YcgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MLNIFLSYVFLGLSLAAPVGPVNAAQIDRGMKGGFFHAWLFGLGAVTADVLYMALIYFGVAQFLTAPFLKTFLWLFGFFV
LTYTGIESLVKAKEVSLMRGAGEKGSYRKSFLSGLVISLSNPLSIMFWLGIYGSILAKTVEAYESYQLLICSSGILIGLF
LWDLAMSFLAGTFRTFLSPRMIQGTTWLAGISLIVFGCYFGYQGILELLQAGR

Sequences:

>Translated_213_residues
MLNIFLSYVFLGLSLAAPVGPVNAAQIDRGMKGGFFHAWLFGLGAVTADVLYMALIYFGVAQFLTAPFLKTFLWLFGFFV
LTYTGIESLVKAKEVSLMRGAGEKGSYRKSFLSGLVISLSNPLSIMFWLGIYGSILAKTVEAYESYQLLICSSGILIGLF
LWDLAMSFLAGTFRTFLSPRMIQGTTWLAGISLIVFGCYFGYQGILELLQAGR
>Mature_213_residues
MLNIFLSYVFLGLSLAAPVGPVNAAQIDRGMKGGFFHAWLFGLGAVTADVLYMALIYFGVAQFLTAPFLKTFLWLFGFFV
LTYTGIESLVKAKEVSLMRGAGEKGSYRKSFLSGLVISLSNPLSIMFWLGIYGSILAKTVEAYESYQLLICSSGILIGLF
LWDLAMSFLAGTFRTFLSPRMIQGTTWLAGISLIVFGCYFGYQGILELLQAGR

Specific function: Unknown

COG id: COG1280

COG function: function code E; Putative threonine efflux protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rht family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001123 [H]

Pfam domain/function: PF01810 LysE [H]

EC number: NA

Molecular weight: Translated: 23382; Mature: 23382

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIFLSYVFLGLSLAAPVGPVNAAQIDRGMKGGFFHAWLFGLGAVTADVLYMALIYFGV
CHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AQFLTAPFLKTFLWLFGFFVLTYTGIESLVKAKEVSLMRGAGEKGSYRKSFLSGLVISLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
NPLSIMFWLGIYGSILAKTVEAYESYQLLICSSGILIGLFLWDLAMSFLAGTFRTFLSPR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCCH
MIQGTTWLAGISLIVFGCYFGYQGILELLQAGR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLNIFLSYVFLGLSLAAPVGPVNAAQIDRGMKGGFFHAWLFGLGAVTADVLYMALIYFGV
CHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AQFLTAPFLKTFLWLFGFFVLTYTGIESLVKAKEVSLMRGAGEKGSYRKSFLSGLVISLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
NPLSIMFWLGIYGSILAKTVEAYESYQLLICSSGILIGLFLWDLAMSFLAGTFRTFLSPR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCCH
MIQGTTWLAGISLIVFGCYFGYQGILELLQAGR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]