BacMap

Definition	Bacillus licheniformis ATCC 14580, complete genome.
Accession	NC_006322
Length	4,222,645

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The map label for this gene is ycdF [H]

Identifier: 52784163

GI number: 52784163

Start: 317755

End: 318528

Strand: Direct

Name: ycdF [H]

Synonym: BLi00341

Alternate gene names: 52784163

Gene position: 317755-318528 (Clockwise)

Preceding gene: 52784161

Following gene: 52784164

Centisome position: 7.53

GC content: 49.1

Gene sequence:

>774_bases
TTGTATAGTGATTTAAAAGGAAAAACAGCAATTGTGACCGGCTCTTCAAAAGGTATAGGCAAGGCGGTTGCAGAACGGTT
TGGAAAAGAAAAGATGAATGTGGTTGTCAATTATCACAGCGATCCCGGAGGCGCACGGGAAGCCGTCGACAATATTCAAG
CAGCGGGCGGAAACGCCCTTGCGATAGAAGCTGACGTGTCTTCCGAAGAGGACGTGAAAAAGCTGATTAATTCAGCAGTT
GAACACTTTGGTTCACTTGATGTTATGGTCAATAATTCAGGATTTAACGGCGCGGGCGCCTTTCCGCACGAACTTGAGCT
TGATGAGTGGCAGAAAGTGATCGACGTTAATTTAACCGGTGCGTTTCTCTGCGCACGCGAAGCCTTAAAATATATGGCGG
ACCGCCGCATGAAAGGAAGCATACTCAATATATCCAGCGTTCATCAGCAAATTCCGAGACCGAAAAATGTTCACTACTCC
GCTTCAAAAGGCGGAATGAAGCTGTTAACAGAAACGCTTGCCCTAGACTATGCGGACAAAGGAATCCGCGTCAATGCGAT
TGCGCCGGGAACGATTGCGACCGAAAGCAATGAAGACTTGGAGGGAAGCCGCAAGTCGGAACAGCTGAAAAAGATACCCA
TGAACGAATTTGGCGAGCCTGAACAAGTGGCTTCCGCAGCGGCATGGCTTGTGTCGCAAGAAGCCGCCTATGTAACGGGC
GCGACTTTATTCGTTGACGGCGGCATGACGCTGTATCCATCACAGCTGGAATAG

Upstream 100 bases:

>100_bases
TTAAAAAAGATCATACTAAAGGTGTGTATTAACATTTTGTTTGATCATATATTGATACCGGGTAATGTACATGGAGAAAA
GAAATTGAGGGGTGTTTAGG

Downstream 100 bases:

>100_bases
CAAAGGCCGTTTTTTCAGCTCCCGTTCTGCCCTTTATTGAATGGCGGAATGGGGGCTTTTTTAATTGTGTTACCTTTTAT
TTTATAGTAAAAGAAACGAG

Product: YcdF

Products: NA

Alternate protein names: GLCDH-II; GDH-II; General stress protein 74; GSP74 [H]

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MYSDLKGKTAIVTGSSKGIGKAVAERFGKEKMNVVVNYHSDPGGAREAVDNIQAAGGNALAIEADVSSEEDVKKLINSAV
EHFGSLDVMVNNSGFNGAGAFPHELELDEWQKVIDVNLTGAFLCAREALKYMADRRMKGSILNISSVHQQIPRPKNVHYS
ASKGGMKLLTETLALDYADKGIRVNAIAPGTIATESNEDLEGSRKSEQLKKIPMNEFGEPEQVASAAAWLVSQEAAYVTG
ATLFVDGGMTLYPSQLE

Sequences:

>Translated_257_residues
MYSDLKGKTAIVTGSSKGIGKAVAERFGKEKMNVVVNYHSDPGGAREAVDNIQAAGGNALAIEADVSSEEDVKKLINSAV
EHFGSLDVMVNNSGFNGAGAFPHELELDEWQKVIDVNLTGAFLCAREALKYMADRRMKGSILNISSVHQQIPRPKNVHYS
ASKGGMKLLTETLALDYADKGIRVNAIAPGTIATESNEDLEGSRKSEQLKKIPMNEFGEPEQVASAAAWLVSQEAAYVTG
ATLFVDGGMTLYPSQLE
>Mature_257_residues
MYSDLKGKTAIVTGSSKGIGKAVAERFGKEKMNVVVNYHSDPGGAREAVDNIQAAGGNALAIEADVSSEEDVKKLINSAV
EHFGSLDVMVNNSGFNGAGAFPHELELDEWQKVIDVNLTGAFLCAREALKYMADRRMKGSILNISSVHQQIPRPKNVHYS
ASKGGMKLLTETLALDYADKGIRVNAIAPGTIATESNEDLEGSRKSEQLKKIPMNEFGEPEQVASAAAWLVSQEAAYVTG
ATLFVDGGMTLYPSQLE

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI19923817, Length=266, Percent_Identity=34.2105263157895, Blast_Score=134, Evalue=6e-32,
Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=32.2834645669291, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=33.2046332046332, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=35.1020408163265, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI59889578, Length=222, Percent_Identity=34.6846846846847, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=32, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI10190704, Length=261, Percent_Identity=30.2681992337165, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI126723750, Length=257, Percent_Identity=29.9610894941634, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=33.5078534031414, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=30.9160305343511, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI31542939, Length=202, Percent_Identity=31.1881188118812, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=30.0813008130081, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=30.0546448087432, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=25.5060728744939, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4503301, Length=210, Percent_Identity=27.1428571428571, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI4504505, Length=242, Percent_Identity=29.3388429752066, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI40254986, Length=250, Percent_Identity=30, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=29.4117647058824, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI83715985, Length=262, Percent_Identity=28.2442748091603, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=30.0578034682081, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI226371731, Length=189, Percent_Identity=30.6878306878307, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI7705855, Length=197, Percent_Identity=29.9492385786802, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7657478, Length=226, Percent_Identity=31.858407079646, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI4503817, Length=232, Percent_Identity=28.0172413793103, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7706318, Length=200, Percent_Identity=25, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI4557649, Length=197, Percent_Identity=29.9492385786802, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=34.136546184739, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=38.6831275720165, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=31.4516129032258, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=34.1176470588235, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=34.375, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=32.1285140562249, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=32.8, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=32, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=30.8300395256917, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=30.8943089430894, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=29.2307692307692, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=28.5714285714286, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787820, Length=234, Percent_Identity=24.7863247863248, Blast_Score=77, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=34.5238095238095, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=32.4110671936759, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=33.7301587301587, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=30.9963099630996, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=31.4741035856574, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17562908, Length=271, Percent_Identity=29.8892988929889, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=32.6612903225806, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=31.0077519379845, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=27.6515151515151, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=28.1954887218045, Blast_Score=107, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=31.0077519379845, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=29.6992481203008, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17560150, Length=271, Percent_Identity=29.520295202952, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=30.3703703703704, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=29.0076335877863, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=29.9242424242424, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=29.9242424242424, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=28.8461538461538, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI72000259, Length=268, Percent_Identity=28.3582089552239, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=29.7397769516729, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=26.1194029850746, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=28.1954887218045, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=28.8537549407115, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=28.2527881040892, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=26.865671641791, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=26.865671641791, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=30.1158301158301, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=27.6679841897233, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=28.8, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71982365, Length=249, Percent_Identity=29.718875502008, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=239, Percent_Identity=30.1255230125523, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17561272, Length=250, Percent_Identity=29.2, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17555612, Length=208, Percent_Identity=29.3269230769231, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17558628, Length=218, Percent_Identity=29.8165137614679, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=201, Percent_Identity=24.8756218905473, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=201, Percent_Identity=24.8756218905473, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=178, Percent_Identity=26.9662921348315, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=195, Percent_Identity=27.6923076923077, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71997099, Length=209, Percent_Identity=26.7942583732057, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=266, Percent_Identity=31.9548872180451, Blast_Score=110, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=35.2040816326531, Blast_Score=90, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=26.530612244898, Blast_Score=69, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=210, Percent_Identity=24.7619047619048, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=33.8709677419355, Blast_Score=132, Evalue=2e-31,
Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=31.5789473684211, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=33.0708661417323, Blast_Score=118, Evalue=4e-27,
Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=30.46875, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=30.4347826086957, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=33.984375, Blast_Score=114, Evalue=5e-26,
Organism=Drosophila melanogaster, GI21357673, Length=251, Percent_Identity=30.6772908366534, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24644337, Length=257, Percent_Identity=32.6848249027237, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=29.0076335877863, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI18859837, Length=237, Percent_Identity=32.9113924050633, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24643142, Length=256, Percent_Identity=27.34375, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24648944, Length=201, Percent_Identity=29.3532338308458, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641232, Length=211, Percent_Identity=27.4881516587678, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24649181, Length=202, Percent_Identity=30.6930693069307, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24663911, Length=242, Percent_Identity=26.8595041322314, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24584752, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21358495, Length=212, Percent_Identity=28.3018867924528, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24580925, Length=199, Percent_Identity=25.1256281407035, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24641388, Length=240, Percent_Identity=29.5833333333333, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI281364494, Length=200, Percent_Identity=29.5, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007234, Length=205, Percent_Identity=30.7317073170732, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 27536; Mature: 27536

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSDLKGKTAIVTGSSKGIGKAVAERFGKEKMNVVVNYHSDPGGAREAVDNIQAAGGNAL
CCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEE
AIEADVSSEEDVKKLINSAVEHFGSLDVMVNNSGFNGAGAFPHELELDEWQKVIDVNLTG
EEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCHH
AFLCAREALKYMADRRMKGSILNISSVHQQIPRPKNVHYSASKGGMKLLTETLALDYADK
HHHHHHHHHHHHHHCCCCCCEECHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCC
GIRVNAIAPGTIATESNEDLEGSRKSEQLKKIPMNEFGEPEQVASAAAWLVSQEAAYVTG
CEEEEEECCCCEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC
ATLFVDGGMTLYPSQLE
EEEEEECCCEECCCCCC
>Mature Secondary Structure
MYSDLKGKTAIVTGSSKGIGKAVAERFGKEKMNVVVNYHSDPGGAREAVDNIQAAGGNAL
CCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEE
AIEADVSSEEDVKKLINSAVEHFGSLDVMVNNSGFNGAGAFPHELELDEWQKVIDVNLTG
EEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCHH
AFLCAREALKYMADRRMKGSILNISSVHQQIPRPKNVHYSASKGGMKLLTETLALDYADK
HHHHHHHHHHHHHHCCCCCCEECHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCC
GIRVNAIAPGTIATESNEDLEGSRKSEQLKKIPMNEFGEPEQVASAAAWLVSQEAAYVTG
CEEEEEECCCCEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC
ATLFVDGGMTLYPSQLE
EEEEEECCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377; 9298659 [H]