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The map label for this gene is ycbB [H]

Identifier: 52784099

GI number: 52784099

Start: 249797

End: 250732

Strand: Direct

Name: ycbB [H]

Synonym: BLi00276

Alternate gene names: 52784099

Gene position: 249797-250732 (Clockwise)

Preceding gene: 52784098

Following gene: 52784103

Centisome position: 5.92

GC content: 46.9

Gene sequence:

>936_bases
GTGCGTTTTTTTATTGCAGATGATGACCGTGCTGTGCGATCGATTTTAAAACAAATCATTGAAGACGAAGATTTGGGTGA
AGTGGCCGGAGAAGCGGAAGACGGCTGCGATTTGGAAGGACACGTCCTGAATTTGCAGCAAATTGATATTTTATTTGTCG
ATCTTTTAATGCCGCTCCGCGACGGAATTGAAACGGTTCGTCATTTGCACGGCGTTTTCTCAGGGAAGATCATCATGATC
TCCCAGGTGGAATCAAAGGAAATGATCGGTGAAGCCTATTCCCTGGGGATCGAATATTATATACATAAACCGATTAACCG
CATTGAAATCTTGAATGTCATTCAAAAAGTCAAGGAGCGCATCGAGCTGGAACGGTCGATCCATGACATACAATCTTCGC
TGAACCGGCTTGTGAGCCTCGGCGGCGGGGGGAAAAACGGCTTTAGGGAAAAAAGCATTCAGGAAACGGGCGAATTTCTC
CTGTCTGAACTCGGAATCGTCGGGGAGAGCGGATCCCAGGATTTAATCGCCATCCTTCAGTATTTGTTTGATGATGAACA
GACCTCATTATATGAAAAGGACTTTCCGCCGCTCAAACAGATTTTTCATCAGATTGCCGTGCAAAAGCTCGGACCGGCTG
CTTCACCCGCAGAGATCAACAGGGAGGTTAAAGCGTCTGAGCAGCGGATACGGCGGGCGGTCAGCCATTCGCTAAACCAT
TTTGCATCACTCGGTTTAACAGACTTTTCAAATCCGCGGTTTGAAAGCTATGCGTCCCGGTTTTTTGACTTTACCGTCAT
CAGCAAAAAAATGAAAGAACTGCAGAAAGACTCTGCCGCCGTCTTGCCCTCCGCCCGCGTCAACACGAAAAAATTCATTC
AGGTTTTCTTTTTGGAAGCCAAGCGGTTGAGTGAAAGCGCTGGAAAAAGAGGTTAA

Upstream 100 bases:

>100_bases
GGAGCTTGGAGGGAGCATTCGATTCCGGAATGATGCAAGCGGTGTTGTGTTTACGATCAGACTTCCGGTTCAACAATTGA
TTCAGAAAGGGTGAAGGCCT

Downstream 100 bases:

>100_bases
AAAGAGCTTCCTCTAAAGTGAGGAAGCTCTTCTGCATGCCGGTTACCCAGCGTATTCTCTTTTCAGCAGTGAAAACATGT
ATACGTCAATCAGTCTTCCT

Product: YcbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MRFFIADDDRAVRSILKQIIEDEDLGEVAGEAEDGCDLEGHVLNLQQIDILFVDLLMPLRDGIETVRHLHGVFSGKIIMI
SQVESKEMIGEAYSLGIEYYIHKPINRIEILNVIQKVKERIELERSIHDIQSSLNRLVSLGGGGKNGFREKSIQETGEFL
LSELGIVGESGSQDLIAILQYLFDDEQTSLYEKDFPPLKQIFHQIAVQKLGPAASPAEINREVKASEQRIRRAVSHSLNH
FASLGLTDFSNPRFESYASRFFDFTVISKKMKELQKDSAAVLPSARVNTKKFIQVFFLEAKRLSESAGKRG

Sequences:

>Translated_311_residues
MRFFIADDDRAVRSILKQIIEDEDLGEVAGEAEDGCDLEGHVLNLQQIDILFVDLLMPLRDGIETVRHLHGVFSGKIIMI
SQVESKEMIGEAYSLGIEYYIHKPINRIEILNVIQKVKERIELERSIHDIQSSLNRLVSLGGGGKNGFREKSIQETGEFL
LSELGIVGESGSQDLIAILQYLFDDEQTSLYEKDFPPLKQIFHQIAVQKLGPAASPAEINREVKASEQRIRRAVSHSLNH
FASLGLTDFSNPRFESYASRFFDFTVISKKMKELQKDSAAVLPSARVNTKKFIQVFFLEAKRLSESAGKRG
>Mature_311_residues
MRFFIADDDRAVRSILKQIIEDEDLGEVAGEAEDGCDLEGHVLNLQQIDILFVDLLMPLRDGIETVRHLHGVFSGKIIMI
SQVESKEMIGEAYSLGIEYYIHKPINRIEILNVIQKVKERIELERSIHDIQSSLNRLVSLGGGGKNGFREKSIQETGEFL
LSELGIVGESGSQDLIAILQYLFDDEQTSLYEKDFPPLKQIFHQIAVQKLGPAASPAEINREVKASEQRIRRAVSHSLNH
FASLGLTDFSNPRFESYASRFFDFTVISKKMKELQKDSAAVLPSARVNTKKFIQVFFLEAKRLSESAGKRG

Specific function: Member of the two-component regulatory system glnL/glnK that positively regulates the expression of the glsA-glnT operon in response to glutamine. GlnL binds the promoter region of glsA- glnT in vitro [H]

COG id: COG0784

COG function: function code T; FOG: CheY-like receiver

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR013972 [H]

Pfam domain/function: PF00072 Response_reg; PF08664 YcbB [H]

EC number: NA

Molecular weight: Translated: 35068; Mature: 35068

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFFIADDDRAVRSILKQIIEDEDLGEVAGEAEDGCDLEGHVLNLQQIDILFVDLLMPLR
CEEEEECCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHH
DGIETVRHLHGVFSGKIIMISQVESKEMIGEAYSLGIEYYIHKPINRIEILNVIQKVKER
HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHH
IELERSIHDIQSSLNRLVSLGGGGKNGFREKSIQETGEFLLSELGIVGESGSQDLIAILQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
YLFDDEQTSLYEKDFPPLKQIFHQIAVQKLGPAASPAEINREVKASEQRIRRAVSHSLNH
HHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FASLGLTDFSNPRFESYASRFFDFTVISKKMKELQKDSAAVLPSARVNTKKFIQVFFLEA
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
KRLSESAGKRG
HHHHHHCCCCC
>Mature Secondary Structure
MRFFIADDDRAVRSILKQIIEDEDLGEVAGEAEDGCDLEGHVLNLQQIDILFVDLLMPLR
CEEEEECCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHH
DGIETVRHLHGVFSGKIIMISQVESKEMIGEAYSLGIEYYIHKPINRIEILNVIQKVKER
HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHH
IELERSIHDIQSSLNRLVSLGGGGKNGFREKSIQETGEFLLSELGIVGESGSQDLIAILQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
YLFDDEQTSLYEKDFPPLKQIFHQIAVQKLGPAASPAEINREVKASEQRIRRAVSHSLNH
HHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FASLGLTDFSNPRFESYASRFFDFTVISKKMKELQKDSAAVLPSARVNTKKFIQVFFLEA
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
KRLSESAGKRG
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8011666; 7704254; 9384377 [H]