Click here to switch to the map view.

The map label for this gene is ybaF [H]

Identifier: 52784003

GI number: 52784003

Start: 150061

End: 150858

Strand: Direct

Name: ybaF [H]

Synonym: BLi00165

Alternate gene names: 52784003

Gene position: 150061-150858 (Clockwise)

Preceding gene: 52784002

Following gene: 52784004

Centisome position: 3.55

GC content: 45.99

Gene sequence:

>798_bases
ATGATGGACAATATCATTATCGGCAAATACGTACCCGGGAAATCGGTCATTCATCGGCTCGATCCGCGTACAAAGCTGTT
AACCATTTTCCTTTTTGTCTTTATCGTTTTTTTCGCGAATAATACGGAAACATATGCATTGCTCGGCCTGTTTACGGTTG
CAGCCGCCGCTTTGTCAGGCGTTCCGGTGCGATTCCTTATAAAAGGAATGAAGCCGGTGTTCTGGATTGTGCTGTTTACG
TTTCTGCTTCATATTTTTATGACAAGGGAAGGACCGGTTCTCGCCGATCTCGGCCTGTTTAAAATTTATGAACAGGGGCT
TGTTCAAGGGATTTTTATTTCTCTGCGCTTTGTTTACCTCATCATGATCACAACGATTTTAACATTGACGACGACTCCAA
TCGAAGTGACCGATGGTTTGGAGCATTTGCTCGGTCCGTTTAAAAAATTGAAGCTTCCCGTCCATGAACTCGCTCTCATG
ATGTCCATCTCCCTCAGATTTATACCGACTTTGATCGAAGAGACGGATAAGATCATGAAAGCGCAAATGGCAAGAGGCGT
CGATTTTGCGAACGGCCCGGTCAAAGAACGCGTCAAAGCGATCGTTCCTCTCCTTGTCCCGCTTTTTGTCAGTGCCTTTA
AAAGAGCTGAAGAGCTTGCAACCGCGATGGAGGCGCGAGGATACAGGGGAGGAGAAGGCCGTACAAAATACAGGCAGCTG
ACATGGAAATGGAAGGATACTTCCGTGCTCCTCATTTTAGCTGTTCTTGGCGTTTTGCTAATTTTATTGCGGACTTAG

Upstream 100 bases:

>100_bases
GCCTTGAAGAGACGCTGGGGATTACGTTCAAAGCGCCGATTTTGACGATTGAAGAAGCAGCCTCCGAAGTTAAAGCTCTT
TTTCAGGAGGAAAATGCCCT

Downstream 100 bases:

>100_bases
GTGATGGACGATGAGAATGAAGTGCACGATTTCATATGACGGACACCTTTTTTACGGCTACCAAGTGCAGCCTGGGCAAA
GAACGATTCAGGATGAGCTT

Product: YbaF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MMDNIIIGKYVPGKSVIHRLDPRTKLLTIFLFVFIVFFANNTETYALLGLFTVAAAALSGVPVRFLIKGMKPVFWIVLFT
FLLHIFMTREGPVLADLGLFKIYEQGLVQGIFISLRFVYLIMITTILTLTTTPIEVTDGLEHLLGPFKKLKLPVHELALM
MSISLRFIPTLIEETDKIMKAQMARGVDFANGPVKERVKAIVPLLVPLFVSAFKRAEELATAMEARGYRGGEGRTKYRQL
TWKWKDTSVLLILAVLGVLLILLRT

Sequences:

>Translated_265_residues
MMDNIIIGKYVPGKSVIHRLDPRTKLLTIFLFVFIVFFANNTETYALLGLFTVAAAALSGVPVRFLIKGMKPVFWIVLFT
FLLHIFMTREGPVLADLGLFKIYEQGLVQGIFISLRFVYLIMITTILTLTTTPIEVTDGLEHLLGPFKKLKLPVHELALM
MSISLRFIPTLIEETDKIMKAQMARGVDFANGPVKERVKAIVPLLVPLFVSAFKRAEELATAMEARGYRGGEGRTKYRQL
TWKWKDTSVLLILAVLGVLLILLRT
>Mature_265_residues
MMDNIIIGKYVPGKSVIHRLDPRTKLLTIFLFVFIVFFANNTETYALLGLFTVAAAALSGVPVRFLIKGMKPVFWIVLFT
FLLHIFMTREGPVLADLGLFKIYEQGLVQGIFISLRFVYLIMITTILTLTTTPIEVTDGLEHLLGPFKKLKLPVHELALM
MSISLRFIPTLIEETDKIMKAQMARGVDFANGPVKERVKAIVPLLVPLFVSAFKRAEELATAMEARGYRGGEGRTKYRQL
TWKWKDTSVLLILAVLGVLLILLRT

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 29872; Mature: 29872

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDNIIIGKYVPGKSVIHRLDPRTKLLTIFLFVFIVFFANNTETYALLGLFTVAAAALSG
CCCCEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
VPVRFLIKGMKPVFWIVLFTFLLHIFMTREGPVLADLGLFKIYEQGLVQGIFISLRFVYL
CCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMITTILTLTTTPIEVTDGLEHLLGPFKKLKLPVHELALMMSISLRFIPTLIEETDKIMK
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQMARGVDFANGPVKERVKAIVPLLVPLFVSAFKRAEELATAMEARGYRGGEGRTKYRQL
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHE
TWKWKDTSVLLILAVLGVLLILLRT
EEEECCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMDNIIIGKYVPGKSVIHRLDPRTKLLTIFLFVFIVFFANNTETYALLGLFTVAAAALSG
CCCCEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
VPVRFLIKGMKPVFWIVLFTFLLHIFMTREGPVLADLGLFKIYEQGLVQGIFISLRFVYL
CCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMITTILTLTTTPIEVTDGLEHLLGPFKKLKLPVHELALMMSISLRFIPTLIEETDKIMK
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQMARGVDFANGPVKERVKAIVPLLVPLFVSAFKRAEELATAMEARGYRGGEGRTKYRQL
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHE
TWKWKDTSVLLILAVLGVLLILLRT
EEEECCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]