Click here to switch to the map view.

The map label for this gene is 52142720

Identifier: 52142720

GI number: 52142720

Start: 2647236

End: 2647922

Strand: Reverse

Name: 52142720

Synonym: BCZK2519

Alternate gene names: NA

Gene position: 2647922-2647236 (Counterclockwise)

Preceding gene: 52142717

Following gene: 52142722

Centisome position: 49.95

GC content: 31.88

Gene sequence:

>687_bases
TTGTGCACAAAAGTAACTCATATTTTTAAAAATCATATCGATATGAATCATTCAAATATAAACTTTTTAATTGAGCAATA
TGGAGAATTGAAAAGATACTGTACATTTTTAACGAAAAACAAATGGGACGGCGAAGATCTTGCCCAAGAAACAGTTTGTA
AAGTTCTTCAAAAATATAGTAATAAAGATATTTGTATGACGCTTGTATATAAAATAGCTAGAAATCGTTGGTTAGACCAG
ATGAAATCAAAATCAGTTCATGAAAAAATAAAGGAACAAATTACTTTTGAAGAACCACAAGAGAATATTGCAGATTTGCA
TGAAATGGTAGGGAAAGTATTATCTTCATTAAATGTACAGCAATCCACGATTTTATTATTAAAGGATGTTTTTCAATATA
GTATCGCTGATATTGCTAAAGTATGTTCTGTATCGGAAGGGGCAGTAAAAGCTTCTTTGTTTCGTAGTAGAAATAGGCTG
AAAACTGTAAGTGAAGAAGGGATTGAGATCGTTGAATTCACAGATGATATGGAAGTTGTAGTAACGTCTATTCGAGAGGA
GAGACCGGAATTATTAACGAAACTGCTTCCGACAATAGATTTTACTAAGTTACCATCTAAACAGCCAGTCTTAGTATTTA
ATGTAAAAAAACCTTCTTCCTACAGTTGTATGCTTTGCGCCGCATAA

Upstream 100 bases:

>100_bases
CCGCGAATGATTGAACATAAACATAATTTTTTTATATGCCCCGTAACTTTTTTATTTGTTGAATCGTTAATTAAGTAAGC
GCTGAAAAGGAGTGGTTATT

Downstream 100 bases:

>100_bases
CAATTATTGGAGGGATATAAAATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAGCGTTCCTATGATAT
ATATTCAAGGTTATTAAAAG

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; DNA-Directed RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Ecf-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MCTKVTHIFKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYSNKDICMTLVYKIARNRWLDQ
MKSKSVHEKIKEQITFEEPQENIADLHEMVGKVLSSLNVQQSTILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRL
KTVSEEGIEIVEFTDDMEVVVTSIREERPELLTKLLPTIDFTKLPSKQPVLVFNVKKPSSYSCMLCAA

Sequences:

>Translated_228_residues
MCTKVTHIFKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYSNKDICMTLVYKIARNRWLDQ
MKSKSVHEKIKEQITFEEPQENIADLHEMVGKVLSSLNVQQSTILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRL
KTVSEEGIEIVEFTDDMEVVVTSIREERPELLTKLLPTIDFTKLPSKQPVLVFNVKKPSSYSCMLCAA
>Mature_228_residues
MCTKVTHIFKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYSNKDICMTLVYKIARNRWLDQ
MKSKSVHEKIKEQITFEEPQENIADLHEMVGKVLSSLNVQQSTILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRL
KTVSEEGIEIVEFTDDMEVVVTSIREERPELLTKLLPTIDFTKLPSKQPVLVFNVKKPSSYSCMLCAA

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26247; Mature: 26247

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCTKVTHIFKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYS
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
NKDICMTLVYKIARNRWLDQMKSKSVHEKIKEQITFEEPQENIADLHEMVGKVLSSLNVQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCH
QSTILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSEEGIEIVEFTDDMEVV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
VTSIREERPELLTKLLPTIDFTKLPSKQPVLVFNVKKPSSYSCMLCAA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEEECC
>Mature Secondary Structure
MCTKVTHIFKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYS
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
NKDICMTLVYKIARNRWLDQMKSKSVHEKIKEQITFEEPQENIADLHEMVGKVLSSLNVQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCH
QSTILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSEEGIEIVEFTDDMEVV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
VTSIREERPELLTKLLPTIDFTKLPSKQPVLVFNVKKPSSYSCMLCAA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA