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The map label for this gene is fliA3 [H]

Identifier: 52142105

GI number: 52142105

Start: 3269582

End: 3270304

Strand: Reverse

Name: fliA3 [H]

Synonym: BCZK3137

Alternate gene names: 52142105

Gene position: 3270304-3269582 (Counterclockwise)

Preceding gene: 52142103

Following gene: 52142106

Centisome position: 61.69

GC content: 33.47

Gene sequence:

>723_bases
GTGTTGAGTTTAGTAATGAAGATCTTAAGAAAACCGAAAATAGAAGATATCGTATGTAACATACAAAATAATGAAGAAGA
TAAAGAAGCTTTTATCGTACAGTATCAGCCGTTTATTAGAAAATCAATCTCGTCTGTCTGCCGCCGATATATTACAGAAC
AGGATGATGAATATAGTATTGGATTGTTTGCGTTTAACGAAGCAATTGAACAGTATTCATATAAAAAAGGGAAATCTTTT
CTAGCGTTTGCTGATCTTCTTATAAAAAGAGATGTAATTGACTATATACGCAAGGAGTCTAAGCATAACCTTGTCTTTTT
AAAAGAAGATGAGCAAGAGGAAATGTTAGAAATGCAAGTATCGCTTACGGAGTATATGAAGGAAATAGAAAATGGTAACC
GTAAGGAAGAAATTCTCCATTTTCAAAGTGTGTTAGCTGATTTTAAAATCACATTTTCAGAGCTTGCTAAAGAATCTCCT
AAGCATCGTGATACGCGTGAACACTTAATAGAAATTGTAAAGATGATTATAAAAGAAGAGGAAATGATGGAGGAGCTGTT
CCGGAAGAAAAAGTTACCGCTTAAACATATTGAACCGCGTGTTAGGGTAAGTCGTAAAACGTTGGAGCGGCATAGAAAAT
ATATTATTGCAATGTGTATTATTTTCGCAAACAACTATACATACATTCTTGATTATATAAGGGGAGGGAAGCATGATGAA
TAA

Upstream 100 bases:

>100_bases
TGAACAACAAGAAGACAAGCCTAAAGAAAATGTGGTTGAATGGTCACTTGTTTAGTGACCATTTTTCTATTTAAAGCAGA
AGGAGGGAGAGAGATTACCC

Downstream 100 bases:

>100_bases
AGGAATTGTGATGGATATAAAAAAACATAGCGTAGTTGTTTTAACGCCAAATGGAGAGTTTATTACGTGTAAAAGAAAAG
GGGATTCTTGCATGATTGGA

Product: putative RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MLSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEQYSYKKGKSF
LAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEYMKEIENGNRKEEILHFQSVLADFKITFSELAKESP
KHRDTREHLIEIVKMIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE

Sequences:

>Translated_240_residues
MLSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEQYSYKKGKSF
LAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEYMKEIENGNRKEEILHFQSVLADFKITFSELAKESP
KHRDTREHLIEIVKMIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE
>Mature_240_residues
MLSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEQYSYKKGKSF
LAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEYMKEIENGNRKEEILHFQSVLADFKITFSELAKESP
KHRDTREHLIEIVKMIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 28855; Mature: 28855

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSI
CHHHHHHHHCCCCHHHHEECCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHCCCCCCCEE
GLFAFNEAIEQYSYKKGKSFLAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
SLTEYMKEIENGNRKEEILHFQSVLADFKITFSELAKESPKHRDTREHLIEIVKMIIKEE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
EMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE
HHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSI
CHHHHHHHHCCCCHHHHEECCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHCCCCCCCEE
GLFAFNEAIEQYSYKKGKSFLAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
SLTEYMKEIENGNRKEEILHFQSVLADFKITFSELAKESPKHRDTREHLIEIVKMIIKEE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
EMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE
HHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]