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The map label for this gene is ypmR [H]

Identifier: 52141370

GI number: 52141370

Start: 4006839

End: 4007618

Strand: Direct

Name: ypmR [H]

Synonym: BCZK3879

Alternate gene names: 52141370

Gene position: 4006839-4007618 (Clockwise)

Preceding gene: 52141373

Following gene: 52141369

Centisome position: 75.59

GC content: 33.72

Gene sequence:

>780_bases
ATGAAAAAAGTCATCTTAACAATTGTTTGTCTCCTCCTTCTAATCATTTCTTATTCTTATTTTGAAAAGAACGATGAGAC
AAAACAAAATGAACCCGAAGAAAAAACAGAAAAAACATCTACTCCAAGTTGGATTGATAAGCAAACAAACGATTCCTTTT
ATCATCTCGTACTAGGTGATTCGCTTGCCAAAGGATATGGATCGACACAAGGGGGATTTGCTGAATTAGCCTCTACACAA
ATAGAAGCACAAATTCATAAACCAATTACTGTAGAAAACCTTGGGATAAACGGTCTTACAACAGATCGTCTCGCTAAAAA
GGTTCAATCAGAAGATGTAAAGCAAAAAATTAGAGCAGCAAATATCATTACAATTAATATTGGGGGAAACAATTTATTTC
GCTTAAATCGTGATGTCGGTGTTATAGACGGTATTAAAATGTTAAATAAAGAAAAAGCTCATTTTGAAGCGGATGTAAAA
AATATTGTAAAGACAGTCCGAGATCAAAATCCGGATGCTTTACTCATTCTTTCTGAACTCTATAACCCGTTACAACTCGA
TGACTCCATCGCAAGTTATGCAGATATGTTTTTAGATGGCTGGAATGAATCCGTTTATTCCATTGCAAAAGCGAATCAAC
CATCTATCGTTTTGCCAATTCGTAAATTAATATCGAATGATAAAAAAGAATTGCTCTTTGACCAAGTACACCCAAATGAT
AAAGGCTATACGATTATTGCCGATTCATTTACAAAAAAAGTGTTAGCCTACAAATATTAA

Upstream 100 bases:

>100_bases
CTGTAAAGTTATTGTAAACTTTTCATAAACATATAATATGCCCTTACATTGCTAATACTGCTGAATATGATACAATTACC
AATTACAAGGAGGATGAATT

Downstream 100 bases:

>100_bases
AGTTTCCAGAAAATAATTCTATTTTTATAACATGTCTTTTTTGTTACAATGAGAGTGGAAGGGGGCCTTTATATGGAATC
ACGCGAGTGGGAACGTATTG

Product: lipase/acylhydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKKVILTIVCLLLLIISYSYFEKNDETKQNEPEEKTEKTSTPSWIDKQTNDSFYHLVLGDSLAKGYGSTQGGFAELASTQ
IEAQIHKPITVENLGINGLTTDRLAKKVQSEDVKQKIRAANIITINIGGNNLFRLNRDVGVIDGIKMLNKEKAHFEADVK
NIVKTVRDQNPDALLILSELYNPLQLDDSIASYADMFLDGWNESVYSIAKANQPSIVLPIRKLISNDKKELLFDQVHPND
KGYTIIADSFTKKVLAYKY

Sequences:

>Translated_259_residues
MKKVILTIVCLLLLIISYSYFEKNDETKQNEPEEKTEKTSTPSWIDKQTNDSFYHLVLGDSLAKGYGSTQGGFAELASTQ
IEAQIHKPITVENLGINGLTTDRLAKKVQSEDVKQKIRAANIITINIGGNNLFRLNRDVGVIDGIKMLNKEKAHFEADVK
NIVKTVRDQNPDALLILSELYNPLQLDDSIASYADMFLDGWNESVYSIAKANQPSIVLPIRKLISNDKKELLFDQVHPND
KGYTIIADSFTKKVLAYKY
>Mature_259_residues
MKKVILTIVCLLLLIISYSYFEKNDETKQNEPEEKTEKTSTPSWIDKQTNDSFYHLVLGDSLAKGYGSTQGGFAELASTQ
IEAQIHKPITVENLGINGLTTDRLAKKVQSEDVKQKIRAANIITINIGGNNLFRLNRDVGVIDGIKMLNKEKAHFEADVK
NIVKTVRDQNPDALLILSELYNPLQLDDSIASYADMFLDGWNESVYSIAKANQPSIVLPIRKLISNDKKELLFDQVHPND
KGYTIIADSFTKKVLAYKY

Specific function: Unknown

COG id: COG2755

COG function: function code E; Lysophospholipase L1 and related esterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013830
- InterPro:   IPR013831
- InterPro:   IPR001087 [H]

Pfam domain/function: PF00657 Lipase_GDSL [H]

EC number: NA

Molecular weight: Translated: 29126; Mature: 29126

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVILTIVCLLLLIISYSYFEKNDETKQNEPEEKTEKTSTPSWIDKQTNDSFYHLVLGD
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEECC
SLAKGYGSTQGGFAELASTQIEAQIHKPITVENLGINGLTTDRLAKKVQSEDVKQKIRAA
HHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
NIITINIGGNNLFRLNRDVGVIDGIKMLNKEKAHFEADVKNIVKTVRDQNPDALLILSEL
CEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHH
YNPLQLDDSIASYADMFLDGWNESVYSIAKANQPSIVLPIRKLISNDKKELLFDQVHPND
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEHHHHHHHCCCHHHHHHHHCCCCC
KGYTIIADSFTKKVLAYKY
CCEEEEECHHHHHHHHCCC
>Mature Secondary Structure
MKKVILTIVCLLLLIISYSYFEKNDETKQNEPEEKTEKTSTPSWIDKQTNDSFYHLVLGD
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEECC
SLAKGYGSTQGGFAELASTQIEAQIHKPITVENLGINGLTTDRLAKKVQSEDVKQKIRAA
HHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
NIITINIGGNNLFRLNRDVGVIDGIKMLNKEKAHFEADVKNIVKTVRDQNPDALLILSEL
CEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHH
YNPLQLDDSIASYADMFLDGWNESVYSIAKANQPSIVLPIRKLISNDKKELLFDQVHPND
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEHHHHHHHCCCHHHHHHHHCCCCC
KGYTIIADSFTKKVLAYKY
CCEEEEECHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 3145906 [H]