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The map label for this gene is sdhB [H]

Identifier: 52141356

GI number: 52141356

Start: 4018479

End: 4019138

Strand: Reverse

Name: sdhB [H]

Synonym: BCZK3893

Alternate gene names: 52141356

Gene position: 4019138-4018479 (Counterclockwise)

Preceding gene: 52141357

Following gene: 52141355

Centisome position: 75.82

GC content: 38.64

Gene sequence:

>660_bases
ATGAAGTATCGCTCAGTATTTGATATTATTGGTCCAGTTATGATTGGTCCATCAAGTTCACATACAGCAGGTGCAGCAAG
AATGGGGCAAGTTGCTCGCCAGCTGTTTCGTCATGAACCAGAAAGAGTAAGCATTTCATTATATGGATCATTTGCAAAGA
CGTATCGTGGGCATGGTACAGATGTAGCGCTAATAGGTGGGATATTAGGATTTGAAACAGATGATTTACGTATTCCAGAG
GCGCTAGAGATAGCAAAAGAGCGCGAAATTGAAGTGGAATTCATTGAAGAAGATGCAAATGCACCTCACCCAAATACAGC
GAGAATTCGTTTGTATAAAGGTGAAGAAGAAATTGAAGTTGTTGCTTGCTCAATTGGTGGCGGTAAAATTGAAGTTGTAG
AATTAAACGGATTCGATCTTCAATTATCAGGCACGAGTCCAGCACTACTTATTGTAAATAACGATCGCTTCGGTGCTATT
GCAGCAGTAGCCTCAATCCTTGCGAAACACGAGATTAACATTAGTACAATGAGTGTTTCTCGTAAAGAAAAAGGAAGAAG
AGCACTAATGGTCATCGAAACAGATGAAATATTAGCAGATGAAGTAATTGAAGAAATAAAAGCGCAACAAAATATTTGTC
AAGTAACTATTATGGAATAA

Upstream 100 bases:

>100_bases
TACAGCGGGACAAATTCGTAGTACAACTGGAAAAGCAACCAATCCGGTAGCTTAATAGAATAGTAAAAAATTTTTTCATA
GAGGTTTAGGGGGAGTTATA

Downstream 100 bases:

>100_bases
TTGCAGGGGGGACACACCATGTTTCGGAACGCAGCGGAACTAGTGGCGCAAGCTAAAGAACAAAATGTAAAAATCGCAGA
AATTATGATTCAATGTGAAA

Product: L-serine dehydratase, beta subunit

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKYRSVFDIIGPVMIGPSSSHTAGAARMGQVARQLFRHEPERVSISLYGSFAKTYRGHGTDVALIGGILGFETDDLRIPE
ALEIAKEREIEVEFIEEDANAPHPNTARIRLYKGEEEIEVVACSIGGGKIEVVELNGFDLQLSGTSPALLIVNNDRFGAI
AAVASILAKHEINISTMSVSRKEKGRRALMVIETDEILADEVIEEIKAQQNICQVTIME

Sequences:

>Translated_219_residues
MKYRSVFDIIGPVMIGPSSSHTAGAARMGQVARQLFRHEPERVSISLYGSFAKTYRGHGTDVALIGGILGFETDDLRIPE
ALEIAKEREIEVEFIEEDANAPHPNTARIRLYKGEEEIEVVACSIGGGKIEVVELNGFDLQLSGTSPALLIVNNDRFGAI
AAVASILAKHEINISTMSVSRKEKGRRALMVIETDEILADEVIEEIKAQQNICQVTIME
>Mature_219_residues
MKYRSVFDIIGPVMIGPSSSHTAGAARMGQVARQLFRHEPERVSISLYGSFAKTYRGHGTDVALIGGILGFETDDLRIPE
ALEIAKEREIEVEFIEEDANAPHPNTARIRLYKGEEEIEVVACSIGGGKIEVVELNGFDLQLSGTSPALLIVNNDRFGAI
AAVASILAKHEINISTMSVSRKEKGRRALMVIETDEILADEVIEEIKAQQNICQVTIME

Specific function: Deaminates Also Threonine, Particularly When It Is Present In High Concentration. [C]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002912
- InterPro:   IPR004643
- InterPro:   IPR005131 [H]

Pfam domain/function: PF01842 ACT; PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 23993; Mature: 23993

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYRSVFDIIGPVMIGPSSSHTAGAARMGQVARQLFRHEPERVSISLYGSFAKTYRGHGT
CCCHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHCCCCC
DVALIGGILGFETDDLRIPEALEIAKEREIEVEFIEEDANAPHPNTARIRLYKGEEEIEV
CEEEEHHHHCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEE
VACSIGGGKIEVVELNGFDLQLSGTSPALLIVNNDRFGAIAAVASILAKHEINISTMSVS
EEEECCCCEEEEEEECCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEC
RKEKGRRALMVIETDEILADEVIEEIKAQQNICQVTIME
HHCCCCEEEEEEECHHHHHHHHHHHHHHCCCEEEEEEEC
>Mature Secondary Structure
MKYRSVFDIIGPVMIGPSSSHTAGAARMGQVARQLFRHEPERVSISLYGSFAKTYRGHGT
CCCHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHCCCCC
DVALIGGILGFETDDLRIPEALEIAKEREIEVEFIEEDANAPHPNTARIRLYKGEEEIEV
CEEEEHHHHCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEE
VACSIGGGKIEVVELNGFDLQLSGTSPALLIVNNDRFGAIAAVASILAKHEINISTMSVS
EEEECCCCEEEEEEECCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEC
RKEKGRRALMVIETDEILADEVIEEIKAQQNICQVTIME
HHCCCCEEEEEEECHHHHHHHHHHHHHHCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]