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The map label for this gene is ykkC [H]

Identifier: 52141280

GI number: 52141280

Start: 4084557

End: 4084889

Strand: Direct

Name: ykkC [H]

Synonym: BCZK3967

Alternate gene names: 52141280

Gene position: 4084557-4084889 (Clockwise)

Preceding gene: 52141283

Following gene: 52141281

Centisome position: 77.05

GC content: 36.64

Gene sequence:

>333_bases
ATGGCATGGATTTATGTAATCTTAGCTGGTATTATTGAAATCTTTTGGGTAATTGGATTAAAACACGCGGAGGCTCCACT
TGAATGGGCTGGTGTTGCGTTATTAATTACAATTAGTTTCGTCTTATTATTTAGAGCTTATAAAGATTTACCTGTTGGTA
CTGTATACGCAGTCTTCACTGGAATTGGAGCTGGTGGAATCGTTCTTACAGAAATTTTCGTTTTCGGAGAGCCATTCTCT
ATCGTAAAAGTATTATTAATTGGTTTAATCTTCTTTGGCGTAATTGGTTTAAAACGAGTAACAGAAGAAAAAGAAGCGAA
GGGGGCCGCATAA

Upstream 100 bases:

>100_bases
AAGTATTCTGGCGTGGACTTTCAAACTGACGGATTGCTCCTTTGCAATGCGTCGTTTTTAAGCCCTTTACCTAACGACTG
GTAGGAAGGAGAAATGACAT

Downstream 100 bases:

>100_bases
AATGGCTTGGGTATTTTTAATTCTAGCTGGTATTTGTGAAATTATTGGTGTACTCTTTATGAAAGTAGCCACTGAAAAGA
AAGGCTGGGCACCAAAAGTT

Product: small multidrug resistance protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MAWIYVILAGIIEIFWVIGLKHAEAPLEWAGVALLITISFVLLFRAYKDLPVGTVYAVFTGIGAGGIVLTEIFVFGEPFS
IVKVLLIGLIFFGVIGLKRVTEEKEAKGAA

Sequences:

>Translated_110_residues
MAWIYVILAGIIEIFWVIGLKHAEAPLEWAGVALLITISFVLLFRAYKDLPVGTVYAVFTGIGAGGIVLTEIFVFGEPFS
IVKVLLIGLIFFGVIGLKRVTEEKEAKGAA
>Mature_109_residues
AWIYVILAGIIEIFWVIGLKHAEAPLEWAGVALLITISFVLLFRAYKDLPVGTVYAVFTGIGAGGIVLTEIFVFGEPFSI
VKVLLIGLIFFGVIGLKRVTEEKEAKGAA

Specific function: Part of a multidrug efflux pump. Confers resistance to a broad range of toxic compounds such as cationic dyes, neutral and anionic antimicrobials [H]

COG id: COG2076

COG function: function code P; Membrane transporters of cations and cationic drugs

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small multidrug resistance (SMR) protein family. YkkC/ykkD (TC 2.A.7.1.5) subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082378, Length=105, Percent_Identity=40, Blast_Score=73, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000390 [H]

Pfam domain/function: PF00893 Multi_Drug_Res [H]

EC number: NA

Molecular weight: Translated: 11912; Mature: 11780

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWIYVILAGIIEIFWVIGLKHAEAPLEWAGVALLITISFVLLFRAYKDLPVGTVYAVFT
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
GIGAGGIVLTEIFVFGEPFSIVKVLLIGLIFFGVIGLKRVTEEKEAKGAA
CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AWIYVILAGIIEIFWVIGLKHAEAPLEWAGVALLITISFVLLFRAYKDLPVGTVYAVFT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
GIGAGGIVLTEIFVFGEPFSIVKVLLIGLIFFGVIGLKRVTEEKEAKGAA
CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA