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The map label for this gene is yahJ [H]

Identifier: 52141009

GI number: 52141009

Start: 4351166

End: 4352431

Strand: Reverse

Name: yahJ [H]

Synonym: BCZK4241

Alternate gene names: 52141009

Gene position: 4352431-4351166 (Counterclockwise)

Preceding gene: 52141008

Following gene: 52141010

Centisome position: 82.11

GC content: 37.91

Gene sequence:

>1266_bases
TTGTTTGAGAGGATGATTAAAATGCAAAATGTGTATTGGTTAACGAATGTACGATTAGAAACAGGTTACAAGTTTAATAA
TGAAGTAGTTACAGGTACAGAAACAGCTTTGCATCATTTACTTATACAAGATGGAAAGATTGAAAAGATTGTACTTGCGG
ATGTACCGCTTCAAACAGAATATGAAACGAAAGATGCGAAAGAATTGCTTGTGCTTCCGTCGTTTGTGGAAAATCATTTT
CACTTGGATAAGACAAAACTTGGTGGTCCATGGGAAGCATGTACACCAGTAAAAAATATTATTGAGAGATTAGAGTTAGA
ACAGCAGGAGTTACCGATTTTAGCTCAAACAACTGGAGAGAGAGCAGAGTTATTACTAAGAAACATTTTAAATGCTGGTT
CGACTCATATTCGAACGCATGTAAATATTGATCCGTATATCGGTCTTAAAAACTTAGAATCTGTACGTCAAACATTAGAG
AATATGAAAGATGCGTTTACATATGAAATCGTAGCATTCCCGCAGCATGGTTTACTTCGTACAGAAGCGCATTCTCTTAT
GAGAGAAGCGATGAAAATGGGCGCAACTTTAGTAGGTGGTGTAGATCCAGCTACTGTAGATAATAATATTGAAAAATCAC
TTTTTGATATGATGGAAATCGCTGTAGAGGCAAATGCTGATGTTGATTTGCATTTACATGATGCAGGGCATTTAGGTATT
TATACAATTAAAAAGTTAGCTCAGTATACAGAGGAGGCTAGTTGGGACGGGCGTGTTGCGGTCAGTCATGCATTTAGCCT
AGGAGATGTATCTAAAGAAGAAGGAGCAGATATGGCAGACTTATTAGCTGAAAGAGGAATGTCTATTATTACGACAGTGC
CAATTAACAGAAATATGCCGCCAGTACCATTACTTACAGAAAAGGGTGTTCCCGTTTCTTTAGGTTGCGATAGTATGTTT
GATTCATGGGGACCATTTGGAAATGCTGATATTTTTGAAAGAGTAGGGCGGTTAGCAGAAAAGTATCGCTGGATTGATGA
GAAGTCTTTATCTTCTTCTTTAGCGTATATTACAGGTGGAAAAACGCCATTGGATCAAGAAGGAAATCAAGTTTGGCCTA
AAGTAGGAGATAAAGCTGATTTCGTCTTCTTACAAGCTACTTGTTCAGCAGAAGCGATTGCTAGACGAGCAAAGCGACCA
GCTGTAATGAGAGACGGAAAAATAGTAGCAGGTTCCTTGCAACATGTTCAAGGAGTATTGATTTAA

Upstream 100 bases:

>100_bases
TGTTCAGCCGAGGTAGTAGCAAGACAAACAGAGCGCTGTGCGGTTTTATATAAAGGAAATGTTGTTGCTGGTAGTTTGGA
AAAAACGGCTATAAATAATC

Downstream 100 bases:

>100_bases
TTTACGTATCTCCCTAATTTATATATATTTTTTCAAGGGTTCCTAATGAAAGAATAGGAATCCTTCTTTTTTACGAGAAA
AGGAGGGGAATAGGTGACAC

Product: putative deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MFERMIKMQNVYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTEYETKDAKELLVLPSFVENHF
HLDKTKLGGPWEACTPVKNIIERLELEQQELPILAQTTGERAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLE
NMKDAFTYEIVAFPQHGLLRTEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGI
YTIKKLAQYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMPPVPLLTEKGVPVSLGCDSMF
DSWGPFGNADIFERVGRLAEKYRWIDEKSLSSSLAYITGGKTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRP
AVMRDGKIVAGSLQHVQGVLI

Sequences:

>Translated_421_residues
MFERMIKMQNVYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTEYETKDAKELLVLPSFVENHF
HLDKTKLGGPWEACTPVKNIIERLELEQQELPILAQTTGERAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLE
NMKDAFTYEIVAFPQHGLLRTEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGI
YTIKKLAQYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMPPVPLLTEKGVPVSLGCDSMF
DSWGPFGNADIFERVGRLAEKYRWIDEKSLSSSLAYITGGKTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRP
AVMRDGKIVAGSLQHVQGVLI
>Mature_421_residues
MFERMIKMQNVYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTEYETKDAKELLVLPSFVENHF
HLDKTKLGGPWEACTPVKNIIERLELEQQELPILAQTTGERAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLE
NMKDAFTYEIVAFPQHGLLRTEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGI
YTIKKLAQYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMPPVPLLTEKGVPVSLGCDSMF
DSWGPFGNADIFERVGRLAEKYRWIDEKSLSSSLAYITGGKTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRP
AVMRDGKIVAGSLQHVQGVLI

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786517, Length=405, Percent_Identity=40.7407407407407, Blast_Score=299, Evalue=3e-82,
Organism=Escherichia coli, GI1786531, Length=400, Percent_Identity=25.25, Blast_Score=104, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46846; Mature: 46846

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFERMIKMQNVYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTE
CHHHHHHHCCEEEEEEEEEECCCEECCEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCC
YETKDAKELLVLPSFVENHFHLDKTKLGGPWEACTPVKNIIERLELEQQELPILAQTTGE
CCCCCCHHHEECHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCEEEECCCH
RAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLENMKDAFTYEIVAFPQHGLLR
HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHH
TEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGI
HHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
YTIKKLAQYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMP
HHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCHHHCCCHHHHHHHCCCEEEEEECCCCCCC
PVPLLTEKGVPVSLGCDSMFDSWGPFGNADIFERVGRLAEKYRWIDEKSLSSSLAYITGG
CCCEEECCCCEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCEEEEECC
KTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRPAVMRDGKIVAGSLQHVQGVL
CCCCCCCCCEECCCCCCCCCEEEEEECCCHHHHHHHHCCCCEECCCEEEECCHHHHCCCC
I
C
>Mature Secondary Structure
MFERMIKMQNVYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTE
CHHHHHHHCCEEEEEEEEEECCCEECCEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCC
YETKDAKELLVLPSFVENHFHLDKTKLGGPWEACTPVKNIIERLELEQQELPILAQTTGE
CCCCCCHHHEECHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCEEEECCCH
RAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLENMKDAFTYEIVAFPQHGLLR
HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHH
TEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGI
HHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
YTIKKLAQYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMP
HHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCHHHCCCHHHHHHHCCCEEEEEECCCCCCC
PVPLLTEKGVPVSLGCDSMFDSWGPFGNADIFERVGRLAEKYRWIDEKSLSSSLAYITGG
CCCEEECCCCEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCEEEEECC
KTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRPAVMRDGKIVAGSLQHVQGVL
CCCCCCCCCEECCCCCCCCCEEEEEECCCHHHHHHHHCCCCEECCCEEEECCHHHHCCCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]