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The map label for this gene is yahJ [H]

Identifier: 52141008

GI number: 52141008

Start: 4352424

End: 4353674

Strand: Reverse

Name: yahJ [H]

Synonym: BCZK4242

Alternate gene names: 52141008

Gene position: 4353674-4352424 (Counterclockwise)

Preceding gene: 52141007

Following gene: 52141009

Centisome position: 82.13

GC content: 38.05

Gene sequence:

>1251_bases
GTGAGTGTGAAATCACAATATTGGTTAACGAATGTAAAACTTGAATGTGGGTACGTATATGAGGAATCACGAATTACAAG
TACAGAAACGGAAATTTGTAGTTTATTTATTGAAGATGGAAAGATTACGAACATATTACCTGGAATTGTAACAGAGCAAG
ATGGTGAAGTAGTAAATGCAAATGGTTTACTGGCATTACCAGCATTTGAAGAAATGCATATCCATATTGATAAAACGTAT
TATGGTGGACCATGGAAAGCATGTACACCAGTAAAGAGTATATTCACTCGTATTCATGAGGAGCAAACTATTCTTCCGAA
GCAATTAGAAACTGCAAAGAGTAGAGCGGAGAAAATGTTGCAATTACTTCTTGAAAATGGAGCGACAAATATTCGAACAC
ATTGCAATATTGATCCTGTAATTGGTCTTGGGAATTTAGAAGCAACGATTGCGGCACTGGAAACATATAAAGATAAGTTA
TCAGCAAAAATTGTAGCATTCCCGCAACACGGTTTGTTACGAAGTAATTCCGTAGGGCTTGTAAAAGACGCTATGCGTAT
GGGAGCTCATTTAGTAGGTGGAGTAGATCCAGCTACAGTAGATGGTAATATTGAAAAATCATTGAATACAATTATGGATA
TTGCAGTAGAGTTTGATTCAGACGTTGATATTCATTTACATGACGCGGATCAACTCGGAACATTTACAATGAAGAGATTA
GCTGCATTAACAGAAGAAGCAGGGTGGCAAGGAAGAGTTACGATTAGTCATGCTCTTGGACTTGGAGATGTATCTGTAGA
AGAAGCGGGGGAAATGGCTGAACGACTTGCGGCATTAGGTATTGATATAACGTCAACAGTTCCAATTAGTAGACATGTAA
TTCCAGTTCCGTTATTAAATCGTAAAGGTGTAAAAGTCTCGCTAGGAAACGATAGTATAACTGATCATTGGTCTCCGTTT
GGGACAGGAGATATGTTGCAAAAGGCAAATTGTCTAGCGGAGAGATTTAGATGGATTGATGAGCGCTCTTTAGGGAAAGC
ACTTCAGTTTATTACGGGTGGGAAATCTATATTAGATGATCAAGGAAATCGTCAATGGCCAAAAATTGGGGATGAAGCAA
ATATCGTCTTTACAGAAGCATCATGTTCAGCCGAGGTAGTAGCAAGACAAACAGAGCGCTGTGCGGTTTTATATAAAGGA
AATGTTGTTGCTGGTAGTTTGGAAAAAACGGCTATAAATAATCTTGTTTGA

Upstream 100 bases:

>100_bases
TTCTATCAGTGTAAAAATGATTTTACACTGATAGAAATTTTTATCTGTTTTTGTTTCGTTTGTAAGTAGAAAAATCATAT
TGCGAAGGGAGATTGACAAA

Downstream 100 bases:

>100_bases
GAGGATGATTAAAATGCAAAATGTGTATTGGTTAACGAATGTACGATTAGAAACAGGTTACAAGTTTAATAATGAAGTAG
TTACAGGTACAGAAACAGCT

Product: putative deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVTEQDGEVVNANGLLALPAFEEMHIHIDKTY
YGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKL
SAKIVAFPQHGLLRSNSVGLVKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDVDIHLHDADQLGTFTMKRL
AALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPISRHVIPVPLLNRKGVKVSLGNDSITDHWSPF
GTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKG
NVVAGSLEKTAINNLV

Sequences:

>Translated_416_residues
MSVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVTEQDGEVVNANGLLALPAFEEMHIHIDKTY
YGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKL
SAKIVAFPQHGLLRSNSVGLVKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDVDIHLHDADQLGTFTMKRL
AALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPISRHVIPVPLLNRKGVKVSLGNDSITDHWSPF
GTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKG
NVVAGSLEKTAINNLV
>Mature_415_residues
SVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVTEQDGEVVNANGLLALPAFEEMHIHIDKTYY
GGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLS
AKIVAFPQHGLLRSNSVGLVKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDVDIHLHDADQLGTFTMKRLA
ALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPISRHVIPVPLLNRKGVKVSLGNDSITDHWSPFG
TGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGN
VVAGSLEKTAINNLV

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786517, Length=407, Percent_Identity=42.997542997543, Blast_Score=325, Evalue=3e-90,
Organism=Escherichia coli, GI1786531, Length=405, Percent_Identity=25.679012345679, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45422; Mature: 45291

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVTEQDGEVVNA
CCCCCCEEEEEEEEEEEEEEECCCCCCHHHHHEEEEECCCCEEEECCCCEECCCCCEECC
NGLLALPAFEEMHIHIDKTYYGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKML
CCEEEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
QLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLSAKIVAFPQHGLLRSNSVGL
HHHHHCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCHH
VKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDVDIHLHDADQLGTFTMKRL
HHHHHHHCHHHHCCCCCCEECCCHHHHHHHHHHHEEEECCCCEEEEECCHHHHHHHHHHH
AALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPISRHVIPVPLLN
HHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCEECCCCCC
RKGVKVSLGNDSITDHWSPFGTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDD
CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
QGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGNVVAGSLEKTAINNLV
CCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEEECCEEECCHHHHHHHCCC
>Mature Secondary Structure 
SVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVTEQDGEVVNA
CCCCCEEEEEEEEEEEEEEECCCCCCHHHHHEEEEECCCCEEEECCCCEECCCCCEECC
NGLLALPAFEEMHIHIDKTYYGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKML
CCEEEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
QLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLSAKIVAFPQHGLLRSNSVGL
HHHHHCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCHH
VKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDVDIHLHDADQLGTFTMKRL
HHHHHHHCHHHHCCCCCCEECCCHHHHHHHHHHHEEEECCCCEEEEECCHHHHHHHHHHH
AALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPISRHVIPVPLLN
HHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCEECCCCCC
RKGVKVSLGNDSITDHWSPFGTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDD
CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
QGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGNVVAGSLEKTAINNLV
CCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEEECCEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]