Click here to switch to the map view.

The map label for this gene is yrdR [H]

Identifier: 52140857

GI number: 52140857

Start: 4504393

End: 4505337

Strand: Direct

Name: yrdR [H]

Synonym: BCZK4395

Alternate gene names: 52140857

Gene position: 4504393-4505337 (Clockwise)

Preceding gene: 52140865

Following gene: 52140854

Centisome position: 84.97

GC content: 38.52

Gene sequence:

>945_bases
TTGAACAAAAAACAAATGCTACTCGGATCCCTCCTATGCTTACTTGCCGTAACAGCTTGGGGATTTATGTTTCCTGTAAT
GGCAAACGCCTTGCAATTTATCGATCCGTTCTTCTTCACAACGATTCGCTATGGATCAGCAGCTATTATTTTTCTTATTC
TGTTATTAATGACCGAAGGGAAAAAGTCACTTCGCTTAGAAAAGAAAACAATTTCGTTACTCTTTTATGGAACAATCGGT
TTCGCGGGATATGGTTTTCTCGTTTTCTATGGACAACAACTTGCCGGACCTTCCGGAGCCATCCATGCCGCGATGATTCA
GTCTCTTATGCCACTCATCGCTTTATTATTACAGTGGATAACAAAAAATAAACGCCCACAAAACTACACATTCCTTTGTA
TGTTTGTTGCATTATTCGGTGTTATGCTTGTCATTTCAAAAGGAAATATTCACTTATTATTTGGAGCTGCCAGTCACCTC
TCAACAAATATACTTATGCTGTGCGGCGTTACTTGCTGGGTCATTTATACAAACGGTGGTGCTAGTTTTCAATCTTGGTC
ACCACTTAGATACACGACGTTAACTTGTTTATTTGGCTCAATTTCACTCATCGTTATCGTCACCTTTTTAACTTATACAA
ACGTCGTTACTGTACCTTCACTATCTACAATTATGAACGTTCGTCTTGAACTCTTATATATGTCTATTATTGCAGGCGTT
ATCGCAGTATTTTGCTGGAACGCGGGAAATCGCTATATTTCATCTATTAACGGCATATTATTTATGAATTTAGTTCCTGT
ACTTGCACTTATCGGTTCCATCTTTCGAGGTTATACAGTCGACAAAATTGAAATTGCCGGAGCCTCGTTAACAATTATCG
CGCTATTATGCAACAATTTATGGCAAAGAAAAGAAAGCACAAAAATCCCCACCTCAGTTCGTTAG

Upstream 100 bases:

>100_bases
ATAACTGTCATAAAAAATCAGTATTTCCTTCTATAAACAATTACTCTTTATACTTATTTCATCAACTTACTATAACGAAA
TGTAAAGGGGAAAGATACTC

Downstream 100 bases:

>100_bases
GTGGGGATTTTTCACATATGAACAGCTCTTGGCCATTCATAGTACATATTCGTTATACATAATGTTTGTTCCATCCATTG
TTCAATTTCTTTCGTGTACA

Product: EamA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MNKKQMLLGSLLCLLAVTAWGFMFPVMANALQFIDPFFFTTIRYGSAAIIFLILLLMTEGKKSLRLEKKTISLLFYGTIG
FAGYGFLVFYGQQLAGPSGAIHAAMIQSLMPLIALLLQWITKNKRPQNYTFLCMFVALFGVMLVISKGNIHLLFGAASHL
STNILMLCGVTCWVIYTNGGASFQSWSPLRYTTLTCLFGSISLIVIVTFLTYTNVVTVPSLSTIMNVRLELLYMSIIAGV
IAVFCWNAGNRYISSINGILFMNLVPVLALIGSIFRGYTVDKIEIAGASLTIIALLCNNLWQRKESTKIPTSVR

Sequences:

>Translated_314_residues
MNKKQMLLGSLLCLLAVTAWGFMFPVMANALQFIDPFFFTTIRYGSAAIIFLILLLMTEGKKSLRLEKKTISLLFYGTIG
FAGYGFLVFYGQQLAGPSGAIHAAMIQSLMPLIALLLQWITKNKRPQNYTFLCMFVALFGVMLVISKGNIHLLFGAASHL
STNILMLCGVTCWVIYTNGGASFQSWSPLRYTTLTCLFGSISLIVIVTFLTYTNVVTVPSLSTIMNVRLELLYMSIIAGV
IAVFCWNAGNRYISSINGILFMNLVPVLALIGSIFRGYTVDKIEIAGASLTIIALLCNNLWQRKESTKIPTSVR
>Mature_314_residues
MNKKQMLLGSLLCLLAVTAWGFMFPVMANALQFIDPFFFTTIRYGSAAIIFLILLLMTEGKKSLRLEKKTISLLFYGTIG
FAGYGFLVFYGQQLAGPSGAIHAAMIQSLMPLIALLLQWITKNKRPQNYTFLCMFVALFGVMLVISKGNIHLLFGAASHL
STNILMLCGVTCWVIYTNGGASFQSWSPLRYTTLTCLFGSISLIVIVTFLTYTNVVTVPSLSTIMNVRLELLYMSIIAGV
IAVFCWNAGNRYISSINGILFMNLVPVLALIGSIFRGYTVDKIEIAGASLTIIALLCNNLWQRKESTKIPTSVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34673; Mature: 34673

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKQMLLGSLLCLLAVTAWGFMFPVMANALQFIDPFFFTTIRYGSAAIIFLILLLMTEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
KKSLRLEKKTISLLFYGTIGFAGYGFLVFYGQQLAGPSGAIHAAMIQSLMPLIALLLQWI
CHHHHHHHHHEEEEEEEHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
TKNKRPQNYTFLCMFVALFGVMLVISKGNIHLLFGAASHLSTNILMLCGVTCWVIYTNGG
HCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCEEEEEEECCC
ASFQSWSPLRYTTLTCLFGSISLIVIVTFLTYTNVVTVPSLSTIMNVRLELLYMSIIAGV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHHHHHHHH
IAVFCWNAGNRYISSINGILFMNLVPVLALIGSIFRGYTVDKIEIAGASLTIIALLCNNL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
WQRKESTKIPTSVR
HHCCCCCCCCCCCC
>Mature Secondary Structure
MNKKQMLLGSLLCLLAVTAWGFMFPVMANALQFIDPFFFTTIRYGSAAIIFLILLLMTEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
KKSLRLEKKTISLLFYGTIGFAGYGFLVFYGQQLAGPSGAIHAAMIQSLMPLIALLLQWI
CHHHHHHHHHEEEEEEEHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
TKNKRPQNYTFLCMFVALFGVMLVISKGNIHLLFGAASHLSTNILMLCGVTCWVIYTNGG
HCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCEEEEEEECCC
ASFQSWSPLRYTTLTCLFGSISLIVIVTFLTYTNVVTVPSLSTIMNVRLELLYMSIIAGV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHHHHHHHH
IAVFCWNAGNRYISSINGILFMNLVPVLALIGSIFRGYTVDKIEIAGASLTIIALLCNNL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
WQRKESTKIPTSVR
HHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]