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The map label for this gene is pdaA [H]

Identifier: 52140364

GI number: 52140364

Start: 4984949

End: 4985686

Strand: Direct

Name: pdaA [H]

Synonym: BCZK4896

Alternate gene names: 52140364

Gene position: 4984949-4985686 (Clockwise)

Preceding gene: 52140365

Following gene: 52140363

Centisome position: 94.04

GC content: 35.37

Gene sequence:

>738_bases
ATGATCAAGCGAGTATTTCAATACATTATTTTATTTTTAACGATTACTATGTACGCGTCACCTCATGCAGGAGCAACTAC
AATTCCCCCTGCTGAACATCATCCAAATACCGAACCTACTTCTTCTACAAAAAAAATCGCGTACTTAACATTTGATGACG
GACCAAACAAATATACTACGCAAATTTTAAACATCTTAAAAGAAAAGAACGGAAAAGCAACTTTCTTTGTTATTGGTGGA
AAAGTACCACATTATAAAAAGACAATGCAACGATTAATTAAAGATGGACATTATATTGGACTTCACAGTATGTCACATGA
TGTAAAACGCCTTTACACCGGTGATCCATCTGCTTTAATTACAGAAATGGAACAAACACAAAACATTGTTCAACAAGTTA
CAAAATTAAATACACATCTCGTTCGTGTCCCGTACGGTAGCATGCCTTACTTAAAGAAGAATTATCGTGATGCACTTGTA
TCAGCCCAGTATAAAATGTGGGATTGGACAATCGATACATACGACTGGAAAAGCTATGACAATCCTTCTGCCATACTAGA
AAGGGTACGTAATCAGAGCGATGAACAAGTCGAAGTGATTTTAATGCATGATTCGAGTGTAACCTTACAAATACTGCCAC
AAGTAATTGATTACTTACAGTCACAAGGATACAAACTTCTTCCCTATAATCCATCTTCTCATCTCAAAGTTAATTTTTGG
AAAGACACAAGATTGTAA

Upstream 100 bases:

>100_bases
GCTTGTTTGAGAGTTCCACTATTGGAGAAAGATATACATAATAAGAAAAGGATTATATTTTCTTTTTTACATCTTGATTG
TCAAACTGAGGGTGAATGTT

Downstream 100 bases:

>100_bases
CAGCTTTAGTACCTATATACTAAAGCTGTTTTATTTTTCTCTTCCCACCCTTCCCATTTTTGTGTAAAATTTTAAATAGT
GATGAAGTTTCGAGGTGAAT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MIKRVFQYIILFLTITMYASPHAGATTIPPAEHHPNTEPTSSTKKIAYLTFDDGPNKYTTQILNILKEKNGKATFFVIGG
KVPHYKKTMQRLIKDGHYIGLHSMSHDVKRLYTGDPSALITEMEQTQNIVQQVTKLNTHLVRVPYGSMPYLKKNYRDALV
SAQYKMWDWTIDTYDWKSYDNPSAILERVRNQSDEQVEVILMHDSSVTLQILPQVIDYLQSQGYKLLPYNPSSHLKVNFW
KDTRL

Sequences:

>Translated_245_residues
MIKRVFQYIILFLTITMYASPHAGATTIPPAEHHPNTEPTSSTKKIAYLTFDDGPNKYTTQILNILKEKNGKATFFVIGG
KVPHYKKTMQRLIKDGHYIGLHSMSHDVKRLYTGDPSALITEMEQTQNIVQQVTKLNTHLVRVPYGSMPYLKKNYRDALV
SAQYKMWDWTIDTYDWKSYDNPSAILERVRNQSDEQVEVILMHDSSVTLQILPQVIDYLQSQGYKLLPYNPSSHLKVNFW
KDTRL
>Mature_245_residues
MIKRVFQYIILFLTITMYASPHAGATTIPPAEHHPNTEPTSSTKKIAYLTFDDGPNKYTTQILNILKEKNGKATFFVIGG
KVPHYKKTMQRLIKDGHYIGLHSMSHDVKRLYTGDPSALITEMEQTQNIVQQVTKLNTHLVRVPYGSMPYLKKNYRDALV
SAQYKMWDWTIDTYDWKSYDNPSAILERVRNQSDEQVEVILMHDSSVTLQILPQVIDYLQSQGYKLLPYNPSSHLKVNFW
KDTRL

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=166, Percent_Identity=30.7228915662651, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28355; Mature: 28355

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRVFQYIILFLTITMYASPHAGATTIPPAEHHPNTEPTSSTKKIAYLTFDDGPNKYTT
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHH
QILNILKEKNGKATFFVIGGKVPHYKKTMQRLIKDGHYIGLHSMSHDVKRLYTGDPSALI
HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCHHHHH
TEMEQTQNIVQQVTKLNTHLVRVPYGSMPYLKKNYRDALVSAQYKMWDWTIDTYDWKSYD
HHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCC
NPSAILERVRNQSDEQVEVILMHDSSVTLQILPQVIDYLQSQGYKLLPYNPSSHLKVNFW
CHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEE
KDTRL
CCCCC
>Mature Secondary Structure
MIKRVFQYIILFLTITMYASPHAGATTIPPAEHHPNTEPTSSTKKIAYLTFDDGPNKYTT
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHH
QILNILKEKNGKATFFVIGGKVPHYKKTMQRLIKDGHYIGLHSMSHDVKRLYTGDPSALI
HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCHHHHH
TEMEQTQNIVQQVTKLNTHLVRVPYGSMPYLKKNYRDALVSAQYKMWDWTIDTYDWKSYD
HHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCC
NPSAILERVRNQSDEQVEVILMHDSSVTLQILPQVIDYLQSQGYKLLPYNPSSHLKVNFW
CHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEE
KDTRL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]