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The map label for this gene is yidD [C]

Identifier: 51894473

GI number: 51894473

Start: 3564897

End: 3565109

Strand: Reverse

Name: yidD [C]

Synonym: STH3339

Alternate gene names: 51894473

Gene position: 3565109-3564897 (Counterclockwise)

Preceding gene: 51894474

Following gene: 51894472

Centisome position: 99.97

GC content: 64.79

Gene sequence:

>213_bases
ATGACGCGTCTTCTGATGCTGCTGGTGCGCTTCTACCAGCGGTACCTCTCGCCGCTCAAGGGCGGACCGACGTGCCGCTT
TACCCCTTCCTGCTCGCAGTATGCCTATGAGGCGCTCGCCAAGTACGGCGCCATAAAGGGCACCTGGCTCGCGGTGCGCC
GCGTGCTTCGTTGCCACCCCTTTCATCCGGGCGGGTACGACCCGGTCCCTTAG

Upstream 100 bases:

>100_bases
CCGCCAGGCAGCGCTGGACATGCCGTTCCCGGAACTCCGGCAGAAGGTCGAGGAACTCTTTGAACGGGCGGGTCTTCTGC
AGCGGGAAGGATAGACGGTC

Downstream 100 bases:

>100_bases
CCGCCGACATCCCGAATTCTCCTGGGGGGTTTCCATATTTGATCACCTCGTTCTTGGTTCCCGAGTGGCTGGTTCAGCCC
ATGACCAAACTGCTGGAAGT

Product: putative alpha-hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MTRLLMLLVRFYQRYLSPLKGGPTCRFTPSCSQYAYEALAKYGAIKGTWLAVRRVLRCHPFHPGGYDPVP

Sequences:

>Translated_70_residues
MTRLLMLLVRFYQRYLSPLKGGPTCRFTPSCSQYAYEALAKYGAIKGTWLAVRRVLRCHPFHPGGYDPVP
>Mature_69_residues
TRLLMLLVRFYQRYLSPLKGGPTCRFTPSCSQYAYEALAKYGAIKGTWLAVRRVLRCHPFHPGGYDPVP

Specific function: Unknown

COG id: COG0759

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0161 family

Homologues:

Organism=Escherichia coli, GI87082322, Length=69, Percent_Identity=63.768115942029, Blast_Score=98, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3339_SYMTH (Q67J30)

Other databases:

- EMBL:   AP006840
- RefSeq:   YP_077164.1
- GeneID:   2981085
- GenomeReviews:   AP006840_GR
- KEGG:   sth:STH3339
- NMPDR:   fig|292459.1.peg.3205
- HOGENOM:   HBG634291
- OMA:   HPERYED
- ProtClustDB:   CLSK2516638
- BioCyc:   STHE292459:STH3339-MONOMER
- HAMAP:   MF_00386
- InterPro:   IPR002696
- ProDom:   PD004225
- TIGRFAMs:   TIGR00278

Pfam domain/function: PF01809 DUF37

EC number: NA

Molecular weight: Translated: 8021; Mature: 7889

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLLMLLVRFYQRYLSPLKGGPTCRFTPSCSQYAYEALAKYGAIKGTWLAVRRVLRCHP
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
FHPGGYDPVP
CCCCCCCCCC
>Mature Secondary Structure 
TRLLMLLVRFYQRYLSPLKGGPTCRFTPSCSQYAYEALAKYGAIKGTWLAVRRVLRCHP
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
FHPGGYDPVP
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA