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The map label for this gene is jag [H]

Identifier: 51894471

GI number: 51894471

Start: 3563567

End: 3564184

Strand: Reverse

Name: jag [H]

Synonym: STH3337

Alternate gene names: 51894471

Gene position: 3564184-3563567 (Counterclockwise)

Preceding gene: 51894472

Following gene: 161899035

Centisome position: 99.95

GC content: 68.12

Gene sequence:

>618_bases
ATGAGAAGCGTGCAGCGGAGCGGCCGCACGGTAGACGAGGCGGTGGCGGCGGCGCTGGAGGAGCTTGGCGTGCCGTCCGA
CCGGGTTACCGTTGAGGTGCTGGATGAGGGGAAGGGGGGCTTCCTCGGCATCGGGGCACGGCCTGCTACCGTTCGCGTAA
CCGTGAAGGAGAGCCGGGCCGAACGGGTGGAGGCCTTCCTGGGCGACGTCTGCGAGGCGATGGGCGTCGGTGTGCGGATG
GAGATCCGCGAGGACGGGGAGTATATCCACGTTGACATTACCGGCCAGGAGGCCGGCATCCTGATCGGCCATCACGGACA
GACGCTGGACGCGCTGCAGTACCTGACCAACCTGGTGGCTGCCCGCTCCGACCGGCATGGGCCGCGGATCCTGCTGGACG
TGGAAGGGTACCGCAAACGTCGGACGGAGACCCTGACGAACCTGGCCAGGCGGCTGGCGGAGCGGGTCGTGCGAACCGGC
GAGCGGGCCGTGCTGGAGCCGATGAGCGCCCAGGAGCGCCGGGTGATCCACCTGGCCCTGCAGGACTTCCCGGGTGTGAC
GACGGCCAGCGAGGGACAGGATCCGTTCCGCAGGGTGGTCATCTATAAGAAGGATTAG

Upstream 100 bases:

>100_bases
GGGTGGTCAGCACCTTCTTCGGGTTGATCCAGCAAGCAATCTACCCGGGGTTCCCCCGGTTTAAGGGCAGCCTCGGCTCG
AAAGGGGAAGCGTAACCGAC

Downstream 100 bases:

>100_bases
AAGGGTGCCGGTGGCCAGGTAGCATCGCTACCCGGCCACTGTTGTTGAAAGGAGGAAAAGCCGTGGGGGAGGAGACCATC
GCCGCGATCGCGACCGGAGC

Product: SpoIIIJ-associated RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MRSVQRSGRTVDEAVAAALEELGVPSDRVTVEVLDEGKGGFLGIGARPATVRVTVKESRAERVEAFLGDVCEAMGVGVRM
EIREDGEYIHVDITGQEAGILIGHHGQTLDALQYLTNLVAARSDRHGPRILLDVEGYRKRRTETLTNLARRLAERVVRTG
ERAVLEPMSAQERRVIHLALQDFPGVTTASEGQDPFRRVVIYKKD

Sequences:

>Translated_205_residues
MRSVQRSGRTVDEAVAAALEELGVPSDRVTVEVLDEGKGGFLGIGARPATVRVTVKESRAERVEAFLGDVCEAMGVGVRM
EIREDGEYIHVDITGQEAGILIGHHGQTLDALQYLTNLVAARSDRHGPRILLDVEGYRKRRTETLTNLARRLAERVVRTG
ERAVLEPMSAQERRVIHLALQDFPGVTTASEGQDPFRRVVIYKKD
>Mature_205_residues
MRSVQRSGRTVDEAVAAALEELGVPSDRVTVEVLDEGKGGFLGIGARPATVRVTVKESRAERVEAFLGDVCEAMGVGVRM
EIREDGEYIHVDITGQEAGILIGHHGQTLDALQYLTNLVAARSDRHGPRILLDVEGYRKRRTETLTNLARRLAERVVRTG
ERAVLEPMSAQERRVIHLALQDFPGVTTASEGQDPFRRVVIYKKD

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 22640; Mature: 22640

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVQRSGRTVDEAVAAALEELGVPSDRVTVEVLDEGKGGFLGIGARPATVRVTVKESRA
CCCCHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEECCCCEEEEEEEEHHHH
ERVEAFLGDVCEAMGVGVRMEIREDGEYIHVDITGQEAGILIGHHGQTLDALQYLTNLVA
HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHH
ARSDRHGPRILLDVEGYRKRRTETLTNLARRLAERVVRTGERAVLEPMSAQERRVIHLAL
HCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHEEEEEE
QDFPGVTTASEGQDPFRRVVIYKKD
CCCCCCCCCCCCCCCHHEEEEEECC
>Mature Secondary Structure
MRSVQRSGRTVDEAVAAALEELGVPSDRVTVEVLDEGKGGFLGIGARPATVRVTVKESRA
CCCCHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEECCCCEEEEEEEEHHHH
ERVEAFLGDVCEAMGVGVRMEIREDGEYIHVDITGQEAGILIGHHGQTLDALQYLTNLVA
HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHH
ARSDRHGPRILLDVEGYRKRRTETLTNLARRLAERVVRTGERAVLEPMSAQERRVIHLAL
HCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHEEEEEE
QDFPGVTTASEGQDPFRRVVIYKKD
CCCCCCCCCCCCCCCHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]