Click here to switch to the map view.

The map label for this gene is fdhC [H]

Identifier: 51894431

GI number: 51894431

Start: 3521027

End: 3521890

Strand: Reverse

Name: fdhC [H]

Synonym: STH3297

Alternate gene names: 51894431

Gene position: 3521890-3521027 (Counterclockwise)

Preceding gene: 51894432

Following gene: 51894430

Centisome position: 98.76

GC content: 64.81

Gene sequence:

>864_bases
ATGGCTTTCGCTAGTCCGCAGGAAACCGCACTCGCTGTGGCCCAGGCCAACGAGACCCGGGCGAGCAACTCCATCCCGAA
GTTGATTGTCCTGGGCCTCCTGGGCGGCGCCTTCACCGGCATGGGCGCAGAAGCTGCGACGATGATCTGCCACGACTTTA
CCTTCCTCGGCGCAGGTCTGCAGCAGTTCGCCAAGGGGTCCCTCTTCTCCATCGGCGTCATCTTTGCCGTGATCTGCGGC
GGCGAACTCTTCACCGGCGATGCGCTGCTCTGGCTTGCGTTCATGGACGAGCGGGTCGGCTGGAAGAAGATGCTGAAGGT
CCTCGGCGTCGTTCTCCTGGCCAACGTCGTCGGCGCCACGGCCTACGCCTGGCTGTACTACCAGAGCGGGCTGTTCCTGT
TCAACAACGCCGAACTGGGCGCGGAGGCCGTGCGCACGGCGGTCACCAAGGTCAACCTCACCTGGTGGCAGGTCTTCGTC
CGGGGCGTCCTCTGCAACTGGCTCATCTGCCTGGGCGTCTGGATGGCCTTCGCCTCGAAGGAGGTCATCTCGAAGATCGC
CTCCCTCTACATCGGGGTCATGGTCTTCGTGATGAGCGCCTTCGAGAACTCGGTGGCCAACTTCTACTACCTGCCCGCGG
GCTGGTTTGCCAAGCACATCCCGGCCGTGGTCGAGGCGGCCAACCTGGGCGCCAAGCTGGACACGCTGACGTGGTCCAAC
ATCATCACCAGGAACTGGATCCCGTCCGCGCTGGGCAACTTCGTGGGCGGCGCGCTCTTCGTCGCAACGGCTTACTGGTT
CGTGTACGTGCGCCAGGCCCCGGCGACCCCCGACCAGTCGATGGCGGCGTCGGCCGCGGACTAG

Upstream 100 bases:

>100_bases
CGGCGGAGATTGTGACAGTGGTATCAAGCGTGGCACGCGCCTTGCTTATCCACTGCGCCCGGAGCACGCTCCAGATCACT
GTCACGGGAGGATTGGAATC

Downstream 100 bases:

>100_bases
GCGTGGATTGTGAATCAAGGGAGGAGAACACGTGAAGCAAGTCCTGACCACCTGTCCCTACTGCGGAACGGGCTGCACGT
TCTACCTGAACGTGGAAGGG

Product: putative formate transporter

Products: formate [Periplasm]; formate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MAFASPQETALAVAQANETRASNSIPKLIVLGLLGGAFTGMGAEAATMICHDFTFLGAGLQQFAKGSLFSIGVIFAVICG
GELFTGDALLWLAFMDERVGWKKMLKVLGVVLLANVVGATAYAWLYYQSGLFLFNNAELGAEAVRTAVTKVNLTWWQVFV
RGVLCNWLICLGVWMAFASKEVISKIASLYIGVMVFVMSAFENSVANFYYLPAGWFAKHIPAVVEAANLGAKLDTLTWSN
IITRNWIPSALGNFVGGALFVATAYWFVYVRQAPATPDQSMAASAAD

Sequences:

>Translated_287_residues
MAFASPQETALAVAQANETRASNSIPKLIVLGLLGGAFTGMGAEAATMICHDFTFLGAGLQQFAKGSLFSIGVIFAVICG
GELFTGDALLWLAFMDERVGWKKMLKVLGVVLLANVVGATAYAWLYYQSGLFLFNNAELGAEAVRTAVTKVNLTWWQVFV
RGVLCNWLICLGVWMAFASKEVISKIASLYIGVMVFVMSAFENSVANFYYLPAGWFAKHIPAVVEAANLGAKLDTLTWSN
IITRNWIPSALGNFVGGALFVATAYWFVYVRQAPATPDQSMAASAAD
>Mature_286_residues
AFASPQETALAVAQANETRASNSIPKLIVLGLLGGAFTGMGAEAATMICHDFTFLGAGLQQFAKGSLFSIGVIFAVICGG
ELFTGDALLWLAFMDERVGWKKMLKVLGVVLLANVVGATAYAWLYYQSGLFLFNNAELGAEAVRTAVTKVNLTWWQVFVR
GVLCNWLICLGVWMAFASKEVISKIASLYIGVMVFVMSAFENSVANFYYLPAGWFAKHIPAVVEAANLGAKLDTLTWSNI
ITRNWIPSALGNFVGGALFVATAYWFVYVRQAPATPDQSMAASAAD

Specific function: May act as a formate transporter [H]

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FNT transporter (TC 2.A.44) family [H]

Homologues:

Organism=Escherichia coli, GI1787132, Length=217, Percent_Identity=32.7188940092166, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788837, Length=218, Percent_Identity=30.2752293577982, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI87082249, Length=247, Percent_Identity=27.1255060728745, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 30887; Mature: 30756

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS01005 FORMATE_NITRITE_TP_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFASPQETALAVAQANETRASNSIPKLIVLGLLGGAFTGMGAEAATMICHDFTFLGAGL
CCCCCCHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QQFAKGSLFSIGVIFAVICGGELFTGDALLWLAFMDERVGWKKMLKVLGVVLLANVVGAT
HHHHCCCHHHHHHHHHHHHCCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AYAWLYYQSGLFLFNNAELGAEAVRTAVTKVNLTWWQVFVRGVLCNWLICLGVWMAFASK
HHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVISKIASLYIGVMVFVMSAFENSVANFYYLPAGWFAKHIPAVVEAANLGAKLDTLTWSN
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
IITRNWIPSALGNFVGGALFVATAYWFVYVRQAPATPDQSMAASAAD
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC
>Mature Secondary Structure 
AFASPQETALAVAQANETRASNSIPKLIVLGLLGGAFTGMGAEAATMICHDFTFLGAGL
CCCCCHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QQFAKGSLFSIGVIFAVICGGELFTGDALLWLAFMDERVGWKKMLKVLGVVLLANVVGAT
HHHHCCCHHHHHHHHHHHHCCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AYAWLYYQSGLFLFNNAELGAEAVRTAVTKVNLTWWQVFVRGVLCNWLICLGVWMAFASK
HHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVISKIASLYIGVMVFVMSAFENSVANFYYLPAGWFAKHIPAVVEAANLGAKLDTLTWSN
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
IITRNWIPSALGNFVGGALFVATAYWFVYVRQAPATPDQSMAASAAD
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate [Cytoplasm]; formate [Periplasm] [C]

Specific reaction: formate [Cytoplasm] = formate [Periplasm] formate [Periplasm] = formate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9006048 [H]