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The map label for this gene is fliA [H]

Identifier: 51894120

GI number: 51894120

Start: 3205197

End: 3205958

Strand: Reverse

Name: fliA [H]

Synonym: STH2984

Alternate gene names: 51894120

Gene position: 3205958-3205197 (Counterclockwise)

Preceding gene: 51894121

Following gene: 51894119

Centisome position: 89.9

GC content: 71.13

Gene sequence:

>762_bases
GTGCAGCACCTGGAGCTGTGGCAGCGCTGGCGGCAGTCTCACGACACGGCTGCACGAGACGCCCTGGTCCAGCACTATCT
GTGGCTGGTCCGCTACGTCGCGGGCCGGCTGATGGTGGGCATGCCGGACCACGTGGACCAGGGCGATGTGGAGGGGCACG
GGTGCTTCGGGCTGCTGGAGGCGATTGCCCGCTACGACCCCGACCGGGGGGTCAGGTTCGAGACGTTCGCGATTCCTTGG
ATCCGCGGCGCCTGCCTGGAGGGGCTGCGGGCGATGCAGTGGGCTCCGGCCCTGCGCCGGCGGGTGCGGCAGCTGGAGAG
GGTGCGGGACGAGTTGATGGCCGTCCTGGGCCGCGAGCCCTCCGCCGCGGAACTCGCCGAGCAGATGGGGATCTCGGTGG
AGGAGGCGGAGAGGCGGCTGCAGGAGGCCGGGACGCTCGCGGTGCTCTCGCTGGACGAGGCCCTGGCCTTCGATGACGGC
GAGACCACGGCCCTGGCGGACCGGGTGGCCGACGAGGAGGCGGTGGACCCGGAGCTGGAGAGCCAGCGGGCGGAGCGGCG
GGAGGTGCTGGCCCGGGCGATCGCGTCCCTCACGGAGCAGGAGCAGCTGGTGATCGCGCTGATCTACCAGGAGGGGCTGA
TCGCGAAGGAGGTCAGCGAGATCCTGGGACTCTCGCAGGCCCGGATCTCGCAGGTGCACAGCAAGGCGATCCTGCGGCTC
AGGGGGAAGCTGTCGCGGATGAAGCGGGATCTGGTGTCGTGA

Upstream 100 bases:

>100_bases
CAGGTGCCGGCGCCGTCTGCACCGGGTTCGTTCTTCGGCCGGCTGGCAAGCCTTTTCGGCCGGCGGAGCAGCAGCCTCTA
GAGGAGGGATATCCGTGACC

Downstream 100 bases:

>100_bases
GCCGTGGGGTGTCGGCCGACCTGGGCCGGGAGCCGAGGCGGCGAGATGTGGGCTGTGAGTTGTGAGTGGTGAGAGCGGCT
GTGAGCGGCTGTGTGCGGGG

Product: RNA polymerase sigma factor related to flagellar biosynthesis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MQHLELWQRWRQSHDTAARDALVQHYLWLVRYVAGRLMVGMPDHVDQGDVEGHGCFGLLEAIARYDPDRGVRFETFAIPW
IRGACLEGLRAMQWAPALRRRVRQLERVRDELMAVLGREPSAAELAEQMGISVEEAERRLQEAGTLAVLSLDEALAFDDG
ETTALADRVADEEAVDPELESQRAERREVLARAIASLTEQEQLVIALIYQEGLIAKEVSEILGLSQARISQVHSKAILRL
RGKLSRMKRDLVS

Sequences:

>Translated_253_residues
MQHLELWQRWRQSHDTAARDALVQHYLWLVRYVAGRLMVGMPDHVDQGDVEGHGCFGLLEAIARYDPDRGVRFETFAIPW
IRGACLEGLRAMQWAPALRRRVRQLERVRDELMAVLGREPSAAELAEQMGISVEEAERRLQEAGTLAVLSLDEALAFDDG
ETTALADRVADEEAVDPELESQRAERREVLARAIASLTEQEQLVIALIYQEGLIAKEVSEILGLSQARISQVHSKAILRL
RGKLSRMKRDLVS
>Mature_253_residues
MQHLELWQRWRQSHDTAARDALVQHYLWLVRYVAGRLMVGMPDHVDQGDVEGHGCFGLLEAIARYDPDRGVRFETFAIPW
IRGACLEGLRAMQWAPALRRRVRQLERVRDELMAVLGREPSAAELAEQMGISVEEAERRLQEAGTLAVLSLDEALAFDDG
ETTALADRVADEEAVDPELESQRAERREVLARAIASLTEQEQLVIALIYQEGLIAKEVSEILGLSQARISQVHSKAILRL
RGKLSRMKRDLVS

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=230, Percent_Identity=35.6521739130435, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1789098, Length=240, Percent_Identity=28.75, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789448, Length=236, Percent_Identity=24.5762711864407, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 28599; Mature: 28599

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHLELWQRWRQSHDTAARDALVQHYLWLVRYVAGRLMVGMPDHVDQGDVEGHGCFGLLE
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
AIARYDPDRGVRFETFAIPWIRGACLEGLRAMQWAPALRRRVRQLERVRDELMAVLGREP
HHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SAAELAEQMGISVEEAERRLQEAGTLAVLSLDEALAFDDGETTALADRVADEEAVDPELE
CHHHHHHHHCCCHHHHHHHHHHCCCEEEEEHHHHHHCCCCCHHHHHHHHCCHHHCCCHHH
SQRAERREVLARAIASLTEQEQLVIALIYQEGLIAKEVSEILGLSQARISQVHSKAILRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RGKLSRMKRDLVS
HHHHHHHHHHHCC
>Mature Secondary Structure
MQHLELWQRWRQSHDTAARDALVQHYLWLVRYVAGRLMVGMPDHVDQGDVEGHGCFGLLE
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
AIARYDPDRGVRFETFAIPWIRGACLEGLRAMQWAPALRRRVRQLERVRDELMAVLGREP
HHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SAAELAEQMGISVEEAERRLQEAGTLAVLSLDEALAFDDGETTALADRVADEEAVDPELE
CHHHHHHHHCCCHHHHHHHHHHCCCEEEEEHHHHHHCCCCCHHHHHHHHCCHHHCCCHHH
SQRAERREVLARAIASLTEQEQLVIALIYQEGLIAKEVSEILGLSQARISQVHSKAILRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RGKLSRMKRDLVS
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]