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The map label for this gene is ydiB [H]

Identifier: 51894062

GI number: 51894062

Start: 3153866

End: 3154339

Strand: Reverse

Name: ydiB [H]

Synonym: STH2926

Alternate gene names: 51894062

Gene position: 3154339-3153866 (Counterclockwise)

Preceding gene: 51894063

Following gene: 51894061

Centisome position: 88.45

GC content: 68.78

Gene sequence:

>474_bases
ATGGTGCGCGTGATCAGCAGGAGCCCCGCCCAAACGCAGGCGCTGGGCCGGTGGCTGGGCGAGCGGCTGCAGCCCGGCGA
TTTCGTCGCGCTGGTGGGCGACCTGGGGACGGGCAAAACGGCCCTGTCCACCGGCATCCTGGCGGGGCTGGGGGTGAGCC
GGTCCGGCGGAAGCCCCACCTTCACCCTGCTGTGGGAGTACGAGGGGCGCATCCCGGTGTTCCACTGGGACGTCTACCGC
CTGGAGGATGCCGCGGAGCTGGAGGATCTGGGCTTCGAAGAGTACTTCTTCAGCGACCATGGCGTCAACCTCGTCGAATG
GGCGGACCGGGTGCGGCCGCTCTGGCCCGACGAGGTCCTGGAGATTTCACTCAGCTATGGGAGCGGGGAGCAGGAGCGGG
TGCTCGAACTGACCGGCACCGCCCGCTACCGGCCGCTCCTGGAGGAGTTGGCGCATGCGGGTTTTGGCCTTTGA

Upstream 100 bases:

>100_bases
ACTTCCGCCCCGGGGCGCGCGGCGCGCCGGGGCTTTTTTCTTGACCTGATGCAGCGAGACGCCCAGAATAGGTCTTGATG
GTCTTGGGAGGATGAACGCC

Downstream 100 bases:

>100_bases
CACCGCCACCGCCGCCTGCACCGTCGCGGTGGCGGCGGACGGGCAGGTGCTTTCCGAGTTCACGCTGCAGGTGCCCCGGG
CCCACTCGGTGCGGCTGATG

Product: putative ATPase or kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MVRVISRSPAQTQALGRWLGERLQPGDFVALVGDLGTGKTALSTGILAGLGVSRSGGSPTFTLLWEYEGRIPVFHWDVYR
LEDAAELEDLGFEEYFFSDHGVNLVEWADRVRPLWPDEVLEISLSYGSGEQERVLELTGTARYRPLLEELAHAGFGL

Sequences:

>Translated_157_residues
MVRVISRSPAQTQALGRWLGERLQPGDFVALVGDLGTGKTALSTGILAGLGVSRSGGSPTFTLLWEYEGRIPVFHWDVYR
LEDAAELEDLGFEEYFFSDHGVNLVEWADRVRPLWPDEVLEISLSYGSGEQERVLELTGTARYRPLLEELAHAGFGL
>Mature_157_residues
MVRVISRSPAQTQALGRWLGERLQPGDFVALVGDLGTGKTALSTGILAGLGVSRSGGSPTFTLLWEYEGRIPVFHWDVYR
LEDAAELEDLGFEEYFFSDHGVNLVEWADRVRPLWPDEVLEISLSYGSGEQERVLELTGTARYRPLLEELAHAGFGL

Specific function: Displays ATPase activity, which is modulated by the oligomeric status of the protein. The physiological partner is unknown [H]

COG id: COG0802

COG function: function code R; Predicted ATPase or kinase

Gene ontology:

Cell location: Cytoplasm. Note=Localized predominantly at the cell poles and at the periphery of the bacterium [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0079 family [H]

Homologues:

Organism=Escherichia coli, GI1790610, Length=137, Percent_Identity=38.6861313868613, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003442 [H]

Pfam domain/function: PF02367 UPF0079 [H]

EC number: NA

Molecular weight: Translated: 17424; Mature: 17424

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRVISRSPAQTQALGRWLGERLQPGDFVALVGDLGTGKTALSTGILAGLGVSRSGGSPT
CEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCE
FTLLWEYEGRIPVFHWDVYRLEDAAELEDLGFEEYFFSDHGVNLVEWADRVRPLWPDEVL
EEEEEEECCCEEEEEEHEEECCCHHHHHHCCCHHHCCCCCCCHHHHHHHHCCCCCCCCEE
EISLSYGSGEQERVLELTGTARYRPLLEELAHAGFGL
EEEECCCCCCHHEEEEECCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVRVISRSPAQTQALGRWLGERLQPGDFVALVGDLGTGKTALSTGILAGLGVSRSGGSPT
CEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCE
FTLLWEYEGRIPVFHWDVYRLEDAAELEDLGFEEYFFSDHGVNLVEWADRVRPLWPDEVL
EEEEEEECCCEEEEEEHEEECCCHHHHHHCCCHHHCCCCCCCHHHHHHHHCCCCCCCCEE
EISLSYGSGEQERVLELTGTARYRPLLEELAHAGFGL
EEEECCCCCCHHEEEEECCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]