| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is yeaZ [H]
Identifier: 51894061
GI number: 51894061
Start: 3153184
End: 3153885
Strand: Reverse
Name: yeaZ [H]
Synonym: STH2925
Alternate gene names: 51894061
Gene position: 3153885-3153184 (Counterclockwise)
Preceding gene: 51894062
Following gene: 51894060
Centisome position: 88.44
GC content: 74.79
Gene sequence:
>702_bases ATGCGGGTTTTGGCCTTTGACACCGCCACCGCCGCCTGCACCGTCGCGGTGGCGGCGGACGGGCAGGTGCTTTCCGAGTT CACGCTGCAGGTGCCCCGGGCCCACTCGGTGCGGCTGATGCCGCTGATCGCCCAAACGTTGCGGGAGGCCGGGGTGGACC GGCGGGAACTGGACGCGATCGCCGTCGGCGTGGGACCGGGCTCCTTCACCGGCCTGCGCATCGGCCTGGCGACGGCCAAG GGGCTGGCCCTTGCGCTGGACAAGCCCGTGGTCCCCGTCTCGACCCTGGCAGCCGCCGCCTACGGCACCGGCGCACAGGC GGGCCTGGTGGTGCCGCTGTTGGACGCGAAGCGGGACCAGGTGTTCACGGCGGTGTACGCCGCGGGCGACCGGGACCCGT CTACCTGGACCGAGCTCCTGGGCCCCGCGAACCTGCACATCGACGAGGTCGTGGAGCGGGTCCGTGAGCTGCGGGCGCGG TTGGACCGCCCGTGGCCGTTCATCACCCTCTGCGGCGACGCAGCCGAGCAGCACGCGCCCCGGTTCGGCGGGGACGGCGC CGTGCGGCTGGCCCCCGCGGGGAGCCTGCTGCCCCGGGCCTCCAGCGTGGCGGCCCTGGGGCTCAGCCTGCTCCGGAGCG GCGGGGCGATGAGCCCCGACGCGCTGTCGGTGTGCCCGGCATGGGCGCTGACTTGGCGGTGA
Upstream 100 bases:
>100_bases GTCCTGGAGATTTCACTCAGCTATGGGAGCGGGGAGCAGGAGCGGGTGCTCGAACTGACCGGCACCGCCCGCTACCGGCC GCTCCTGGAGGAGTTGGCGC
Downstream 100 bases:
>100_bases AAGTCCGCTACGGGCGAGGCAGCACCAGCCCGTTAGCCAAAGGCAAGGGTGTCCGTCGTGAGGCGGAATCTGAAGGAAGC CCGAGGCAAAGCCACGACCC
Product: putative glycoprotein endopeptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MRVLAFDTATAACTVAVAADGQVLSEFTLQVPRAHSVRLMPLIAQTLREAGVDRRELDAIAVGVGPGSFTGLRIGLATAK GLALALDKPVVPVSTLAAAAYGTGAQAGLVVPLLDAKRDQVFTAVYAAGDRDPSTWTELLGPANLHIDEVVERVRELRAR LDRPWPFITLCGDAAEQHAPRFGGDGAVRLAPAGSLLPRASSVAALGLSLLRSGGAMSPDALSVCPAWALTWR
Sequences:
>Translated_233_residues MRVLAFDTATAACTVAVAADGQVLSEFTLQVPRAHSVRLMPLIAQTLREAGVDRRELDAIAVGVGPGSFTGLRIGLATAK GLALALDKPVVPVSTLAAAAYGTGAQAGLVVPLLDAKRDQVFTAVYAAGDRDPSTWTELLGPANLHIDEVVERVRELRAR LDRPWPFITLCGDAAEQHAPRFGGDGAVRLAPAGSLLPRASSVAALGLSLLRSGGAMSPDALSVCPAWALTWR >Mature_233_residues MRVLAFDTATAACTVAVAADGQVLSEFTLQVPRAHSVRLMPLIAQTLREAGVDRRELDAIAVGVGPGSFTGLRIGLATAK GLALALDKPVVPVSTLAAAAYGTGAQAGLVVPLLDAKRDQVFTAVYAAGDRDPSTWTELLGPANLHIDEVVERVRELRAR LDRPWPFITLCGDAAEQHAPRFGGDGAVRLAPAGSLLPRASSVAALGLSLLRSGGAMSPDALSVCPAWALTWR
Specific function: Unknown
COG id: COG1214
COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M22 family [H]
Homologues:
Organism=Escherichia coli, GI1788109, Length=217, Percent_Identity=34.5622119815668, Blast_Score=108, Evalue=4e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022496 - InterPro: IPR000905 [H]
Pfam domain/function: PF00814 Peptidase_M22 [H]
EC number: NA
Molecular weight: Translated: 24250; Mature: 24250
Theoretical pI: Translated: 7.45; Mature: 7.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVLAFDTATAACTVAVAADGQVLSEFTLQVPRAHSVRLMPLIAQTLREAGVDRRELDAI CEEEEECCCCCEEEEEEECCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCHHHCCEE AVGVGPGSFTGLRIGLATAKGLALALDKPVVPVSTLAAAAYGTGAQAGLVVPLLDAKRDQ EEECCCCCCCEEEEEEEHHCCEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCH VFTAVYAAGDRDPSTWTELLGPANLHIDEVVERVRELRARLDRPWPFITLCGDAAEQHAP HEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCC RFGGDGAVRLAPAGSLLPRASSVAALGLSLLRSGGAMSPDALSVCPAWALTWR CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEECC >Mature Secondary Structure MRVLAFDTATAACTVAVAADGQVLSEFTLQVPRAHSVRLMPLIAQTLREAGVDRRELDAI CEEEEECCCCCEEEEEEECCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCHHHCCEE AVGVGPGSFTGLRIGLATAKGLALALDKPVVPVSTLAAAAYGTGAQAGLVVPLLDAKRDQ EEECCCCCCCEEEEEEEHHCCEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCH VFTAVYAAGDRDPSTWTELLGPANLHIDEVVERVRELRARLDRPWPFITLCGDAAEQHAP HEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCC RFGGDGAVRLAPAGSLLPRASSVAALGLSLLRSGGAMSPDALSVCPAWALTWR CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]