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The map label for this gene is rpoE [C]

Identifier: 51894038

GI number: 51894038

Start: 3126051

End: 3127538

Strand: Reverse

Name: rpoE [C]

Synonym: STH2902

Alternate gene names: 51894038

Gene position: 3127538-3126051 (Counterclockwise)

Preceding gene: 51894039

Following gene: 51894037

Centisome position: 87.7

GC content: 69.49

Gene sequence:

>1488_bases
ATGGACTACTTCCAGCTGTTGCGGGCCCACCAGGGATACCTGGAGCGGATCGCGCTGGCGATGCTGGGGAACCGGCCCGA
CGCAGAGGACGCCCTGCAGGAGGCGGCCCTGGCCGGCTACCGCCGGTTCGCCCAACTGCGGGATGAGCAGGCCTTCGGGG
CCTGGATGCGGCGGATCCTGATCCGGCAGTGCCGGCAGATCCTGGAGCGCCGCCGGCGGTCCTTTCCCGTGGACGACCTG
GCGGCCCATCTGCCCGACACCGTTCCCGGACCGGACCCGGAAGCGACGGCGATCTGGGAGATGGTGGCACGCCTCGGCGA
CCACCTGCGCCCGGTGGTGGTGCTGCGCTACATGCTGGACATGTCCCAGCAAGAGATCGCCGAGGCGCTGGGCATCCCGC
TGGGCACGGTCAAGTCCCGGCTGGGCAAGGCCCTGCCGCTGGTGGGTCCTGTCATCACGCGGTTCATCCTGGCAGGTGCC
GGGCTGCAGTGGGCCTATGACATGGGGCTGATCGGGGAGCCCGTCGCCGAGGTCACCCAGAACGGCATCACCGTGCGCAT
CCTCGGCGTGGTGGCCGACGCCCGGCGCACCACGGTGCTCTATCAGGTGCTGGGAGCGCCGTCCACGGTGGGGCGGGGGC
GTCAGCCCCGCGTGCCCGTGCATGCCACCATCACGGCCCAGATGAGCGAGTTCACTCCGCCGGAGGAGACGCCGTTGGGC
TACCTCGGCACCGTCTCCACCCTTCCGCTGGAGGCGGAGGCAGCCGAGTTGGAGGTCCGGTTCGACGTGGGCGCGGAAAC
CATCACCCTGACCGTGCCTGCCTCCCGCACCGAGACCGACCGGTTCTCCCGGGAGGTGGCCGTCAACCGGGCCCTGGAGT
ACGACGGGGTGCGGATCACGGTGGAGGCGGTGATCTACACGCCGGCCGAGACCATCGTGCGCTACCGGGAAGAGGTGACC
GAAAGCTTTGACTTCCCGGTGCAGTGGGACGGGGACGTCCACTGCAACTACCTGGAGGCGGGCGGACAGCGTTACCGCCA
ATCGGGATCAGGTGGAGGGCTCAACTCTGTGTCGTACCTGGCCTTTCCCCCTGTGAGGGGGCCGGCCCGGCTGGTGCTGA
AGCCGGCGGTCAAGGCAGAGCCGTTGGACGCGGTCTGGCCCCTGGAGGAAGGGGCCGTGGCCGAGGTGGTGGGCGTGCCG
GTCACCCTGGCGGGGATCGAGCGGCGACCGGGCGCCATCGAGCTCAGCTGGACGAGCCCTGTAAGGGAAGGTTTCGTCGG
GGTCAGCGGGTTCGAGGTGATCGACGGCGAGGGAAACGTGTACCCGCTGGGCGGTTCGTGGGCAGGGTTTTCCAACTACA
CCCATGATGGGGTGCGCTACCAGCGCTACGAGACCGAACTGCCGGAAGGGTTGGAGCCGGTGGCCGTGCGGGCCACCAAG
GCGGGGGTGCTGGTGGACGGTCCCTGGGTCTTCGACCTGCCGGGTTAG

Upstream 100 bases:

>100_bases
AGAGGCCCCCGTGCCGGCGGCGCGGGGGCTTTGCGCTGGCCGCGAACGGGCCCTTCTTCCCCTCTATCTGAGTGAGAACA
CACACCGAGAGGACGGCGCC

Downstream 100 bases:

>100_bases
GGGGTTCCGTGGGGTGGGGCGGATGGAGGCCGCCTCCCCAGTTTCATATCTTGACAATCCACATGCAGGAAAATCGCCGT
CCGGACGCGTACTGTACAGG

Product: RNA polymerase ECF-type sigma factor variant

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MDYFQLLRAHQGYLERIALAMLGNRPDAEDALQEAALAGYRRFAQLRDEQAFGAWMRRILIRQCRQILERRRRSFPVDDL
AAHLPDTVPGPDPEATAIWEMVARLGDHLRPVVVLRYMLDMSQQEIAEALGIPLGTVKSRLGKALPLVGPVITRFILAGA
GLQWAYDMGLIGEPVAEVTQNGITVRILGVVADARRTTVLYQVLGAPSTVGRGRQPRVPVHATITAQMSEFTPPEETPLG
YLGTVSTLPLEAEAAELEVRFDVGAETITLTVPASRTETDRFSREVAVNRALEYDGVRITVEAVIYTPAETIVRYREEVT
ESFDFPVQWDGDVHCNYLEAGGQRYRQSGSGGGLNSVSYLAFPPVRGPARLVLKPAVKAEPLDAVWPLEEGAVAEVVGVP
VTLAGIERRPGAIELSWTSPVREGFVGVSGFEVIDGEGNVYPLGGSWAGFSNYTHDGVRYQRYETELPEGLEPVAVRATK
AGVLVDGPWVFDLPG

Sequences:

>Translated_495_residues
MDYFQLLRAHQGYLERIALAMLGNRPDAEDALQEAALAGYRRFAQLRDEQAFGAWMRRILIRQCRQILERRRRSFPVDDL
AAHLPDTVPGPDPEATAIWEMVARLGDHLRPVVVLRYMLDMSQQEIAEALGIPLGTVKSRLGKALPLVGPVITRFILAGA
GLQWAYDMGLIGEPVAEVTQNGITVRILGVVADARRTTVLYQVLGAPSTVGRGRQPRVPVHATITAQMSEFTPPEETPLG
YLGTVSTLPLEAEAAELEVRFDVGAETITLTVPASRTETDRFSREVAVNRALEYDGVRITVEAVIYTPAETIVRYREEVT
ESFDFPVQWDGDVHCNYLEAGGQRYRQSGSGGGLNSVSYLAFPPVRGPARLVLKPAVKAEPLDAVWPLEEGAVAEVVGVP
VTLAGIERRPGAIELSWTSPVREGFVGVSGFEVIDGEGNVYPLGGSWAGFSNYTHDGVRYQRYETELPEGLEPVAVRATK
AGVLVDGPWVFDLPG
>Mature_495_residues
MDYFQLLRAHQGYLERIALAMLGNRPDAEDALQEAALAGYRRFAQLRDEQAFGAWMRRILIRQCRQILERRRRSFPVDDL
AAHLPDTVPGPDPEATAIWEMVARLGDHLRPVVVLRYMLDMSQQEIAEALGIPLGTVKSRLGKALPLVGPVITRFILAGA
GLQWAYDMGLIGEPVAEVTQNGITVRILGVVADARRTTVLYQVLGAPSTVGRGRQPRVPVHATITAQMSEFTPPEETPLG
YLGTVSTLPLEAEAAELEVRFDVGAETITLTVPASRTETDRFSREVAVNRALEYDGVRITVEAVIYTPAETIVRYREEVT
ESFDFPVQWDGDVHCNYLEAGGQRYRQSGSGGGLNSVSYLAFPPVRGPARLVLKPAVKAEPLDAVWPLEEGAVAEVVGVP
VTLAGIERRPGAIELSWTSPVREGFVGVSGFEVIDGEGNVYPLGGSWAGFSNYTHDGVRYQRYETELPEGLEPVAVRATK
AGVLVDGPWVFDLPG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54182; Mature: 54182

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYFQLLRAHQGYLERIALAMLGNRPDAEDALQEAALAGYRRFAQLRDEQAFGAWMRRIL
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRQCRQILERRRRSFPVDDLAAHLPDTVPGPDPEATAIWEMVARLGDHLRPVVVLRYMLD
HHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHC
MSQQEIAEALGIPLGTVKSRLGKALPLVGPVITRFILAGAGLQWAYDMGLIGEPVAEVTQ
CCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
NGITVRILGVVADARRTTVLYQVLGAPSTVGRGRQPRVPVHATITAQMSEFTPPEETPLG
CCCEEEEEEEHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCC
YLGTVSTLPLEAEAAELEVRFDVGAETITLTVPASRTETDRFSREVAVNRALEYDGVRIT
CCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHEECCCEEEE
VEAVIYTPAETIVRYREEVTESFDFPVQWDGDVHCNYLEAGGQRYRQSGSGGGLNSVSYL
EEEEEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEHHHHCCHHHHHCCCCCCCCCCCEE
AFPPVRGPARLVLKPAVKAEPLDAVWPLEEGAVAEVVGVPVTLAGIERRPGAIELSWTSP
EECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCEEEEEECCH
VREGFVGVSGFEVIDGEGNVYPLGGSWAGFSNYTHDGVRYQRYETELPEGLEPVAVRATK
HHHCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCEEEEEC
AGVLVDGPWVFDLPG
CCEEEECCEEEECCC
>Mature Secondary Structure
MDYFQLLRAHQGYLERIALAMLGNRPDAEDALQEAALAGYRRFAQLRDEQAFGAWMRRIL
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRQCRQILERRRRSFPVDDLAAHLPDTVPGPDPEATAIWEMVARLGDHLRPVVVLRYMLD
HHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHC
MSQQEIAEALGIPLGTVKSRLGKALPLVGPVITRFILAGAGLQWAYDMGLIGEPVAEVTQ
CCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
NGITVRILGVVADARRTTVLYQVLGAPSTVGRGRQPRVPVHATITAQMSEFTPPEETPLG
CCCEEEEEEEHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCC
YLGTVSTLPLEAEAAELEVRFDVGAETITLTVPASRTETDRFSREVAVNRALEYDGVRIT
CCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHEECCCEEEE
VEAVIYTPAETIVRYREEVTESFDFPVQWDGDVHCNYLEAGGQRYRQSGSGGGLNSVSYL
EEEEEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEHHHHCCHHHHHCCCCCCCCCCCEE
AFPPVRGPARLVLKPAVKAEPLDAVWPLEEGAVAEVVGVPVTLAGIERRPGAIELSWTSP
EECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCEEEEEECCH
VREGFVGVSGFEVIDGEGNVYPLGGSWAGFSNYTHDGVRYQRYETELPEGLEPVAVRATK
HHHCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCEEEEEC
AGVLVDGPWVFDLPG
CCEEEECCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA