| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is purC [H]
Identifier: 51893995
GI number: 51893995
Start: 3080295
End: 3081194
Strand: Reverse
Name: purC [H]
Synonym: STH2857
Alternate gene names: 51893995
Gene position: 3081194-3080295 (Counterclockwise)
Preceding gene: 51893996
Following gene: 51893994
Centisome position: 86.4
GC content: 71.78
Gene sequence:
>900_bases GTGCCGGACCCGGGCCTCCGGCGGCTGCACCGGGGGAAGGTGCGGGAGATGTTCGAGCTGGACGCGGACCGGCTCCTCAT GGTGGCCACCGACCGGCTCTCCGCCTTCGACGTCGTCTTTCCGCAGGGCATCCCCGGCAAGGGCCGGGTGCTGACCCAGC TCAGCGCGCTCTGGTTCGGGGCGACCCGGCATATCGTCGCCAACCACCTTGTCAGCGACGACCTCGGCGGCCTGGGCCTG CCCGGGGACGTCCGGCGTCTCCTGGAGGGCCGGTCGCTGGTGGTGCGCCGGGCCCGCCGCATCGACGTCGAGTGCGTGGT GCGGGGGTACCTGGCCGGATCGGGCTGGAAGGAGTACCAGGCCTCCGGCACGGTTTGCGGGATACCCCTCCCGGCGGGGC TCAGGCTCTCCAGCCGGCTGCCGGAGCCCATCTTCACGCCGGCCCTGAAGAACGACCGGGGCCATGACGAGAACGTGCCG GAGGCGGAGGTGCGCAGGCGGCTGGGCGACGCGGTGACCGACTTCATCAAGGAGAAGTCGCTGGCCCTCTACCGTTACGC TGCGGGCGTGGCGGAGAAGGCGGGGATGATCCTGGCGGACACCAAGTTCGAGTTCGGCTTCGTCGGCGACGAGATCGTGC TGATCGACGAGGCCTTTACCCCGGACTCCAGCCGGTACTGGCCGGCCGACCGGTACCGGGAGGGGGAGCCGGTGGACAGC CTGGACAAGCAGCCGGTGCGGGACTGGGCGGAACGGACGGGCTGGAACAAGCAGCCGCCGGCTCCGGAGCTGCCCGGGGA ACTGATCGAGGAGACCGCCCGCCGGTATGCGGATGTGCTCGACCGGCTGCGCAAGGTGCTGGCGGAGACCGCTGCCGGCG CGGGCGGGGGCCGGCGATAG
Upstream 100 bases:
>100_bases ATGCAGGTGATGAACCCGCTGGAGTGCCGACTGGGATCGGAGGACATGAAGGAGGTCTTAGCGCTCCTGGGGGGTGCGTA ACATGGACGTCTTGCTGACG
Downstream 100 bases:
>100_bases ACGGAGCTGACGGAAGCGCGGGCTGGCGCAGAGGAGGCGGGGGCCATGCGGTTCGGGATTCTCGTCTTTCCGGGCACCAA CTGTGAGATGGAGACCTTCT
Product: phosphoribosylaminoimidazole-succinocarboxamide synthase
Products: NA
Alternate protein names: SAICAR synthetase [H]
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MPDPGLRRLHRGKVREMFELDADRLLMVATDRLSAFDVVFPQGIPGKGRVLTQLSALWFGATRHIVANHLVSDDLGGLGL PGDVRRLLEGRSLVVRRARRIDVECVVRGYLAGSGWKEYQASGTVCGIPLPAGLRLSSRLPEPIFTPALKNDRGHDENVP EAEVRRRLGDAVTDFIKEKSLALYRYAAGVAEKAGMILADTKFEFGFVGDEIVLIDEAFTPDSSRYWPADRYREGEPVDS LDKQPVRDWAERTGWNKQPPAPELPGELIEETARRYADVLDRLRKVLAETAAGAGGGRR
Sequences:
>Translated_299_residues MPDPGLRRLHRGKVREMFELDADRLLMVATDRLSAFDVVFPQGIPGKGRVLTQLSALWFGATRHIVANHLVSDDLGGLGL PGDVRRLLEGRSLVVRRARRIDVECVVRGYLAGSGWKEYQASGTVCGIPLPAGLRLSSRLPEPIFTPALKNDRGHDENVP EAEVRRRLGDAVTDFIKEKSLALYRYAAGVAEKAGMILADTKFEFGFVGDEIVLIDEAFTPDSSRYWPADRYREGEPVDS LDKQPVRDWAERTGWNKQPPAPELPGELIEETARRYADVLDRLRKVLAETAAGAGGGRR >Mature_298_residues PDPGLRRLHRGKVREMFELDADRLLMVATDRLSAFDVVFPQGIPGKGRVLTQLSALWFGATRHIVANHLVSDDLGGLGLP GDVRRLLEGRSLVVRRARRIDVECVVRGYLAGSGWKEYQASGTVCGIPLPAGLRLSSRLPEPIFTPALKNDRGHDENVPE AEVRRRLGDAVTDFIKEKSLALYRYAAGVAEKAGMILADTKFEFGFVGDEIVLIDEAFTPDSSRYWPADRYREGEPVDSL DKQPVRDWAERTGWNKQPPAPELPGELIEETARRYADVLDRLRKVLAETAAGAGGGRR
Specific function: De novo purine biosynthesis; seventh step. [C]
COG id: COG0152
COG function: function code F; Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SAICAR synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1788820, Length=244, Percent_Identity=29.5081967213115, Blast_Score=72, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6319326, Length=284, Percent_Identity=42.2535211267606, Blast_Score=221, Evalue=1e-58,
Paralogues:
None
Copy number: 1680 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 13,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013816 - InterPro: IPR001636 - InterPro: IPR018236 [H]
Pfam domain/function: PF01259 SAICAR_synt [H]
EC number: =6.3.2.6 [H]
Molecular weight: Translated: 33168; Mature: 33037
Theoretical pI: Translated: 7.57; Mature: 7.57
Prosite motif: PS01058 SAICAR_SYNTHETASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDPGLRRLHRGKVREMFELDADRLLMVATDRLSAFDVVFPQGIPGKGRVLTQLSALWFG CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHEECCCCCCCCCHHHHHHHHHHHH ATRHIVANHLVSDDLGGLGLPGDVRRLLEGRSLVVRRARRIDVECVVRGYLAGSGWKEYQ HHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCHHHH ASGTVCGIPLPAGLRLSSRLPEPIFTPALKNDRGHDENVPEAEVRRRLGDAVTDFIKEKS CCCCEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LALYRYAAGVAEKAGMILADTKFEFGFVGDEIVLIDEAFTPDSSRYWPADRYREGEPVDS HHHHHHHHHHHHHCCEEEEECCEEECCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCCC LDKQPVRDWAERTGWNKQPPAPELPGELIEETARRYADVLDRLRKVLAETAAGAGGGRR CCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure PDPGLRRLHRGKVREMFELDADRLLMVATDRLSAFDVVFPQGIPGKGRVLTQLSALWFG CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHEECCCCCCCCCHHHHHHHHHHHH ATRHIVANHLVSDDLGGLGLPGDVRRLLEGRSLVVRRARRIDVECVVRGYLAGSGWKEYQ HHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCHHHH ASGTVCGIPLPAGLRLSSRLPEPIFTPALKNDRGHDENVPEAEVRRRLGDAVTDFIKEKS CCCCEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LALYRYAAGVAEKAGMILADTKFEFGFVGDEIVLIDEAFTPDSSRYWPADRYREGEPVDS HHHHHHHHHHHHHCCEEEEECCEEECCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCCC LDKQPVRDWAERTGWNKQPPAPELPGELIEETARRYADVLDRLRKVLAETAAGAGGGRR CCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA