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The map label for this gene is rbpE [H]

Identifier: 51893978

GI number: 51893978

Start: 3060651

End: 3060911

Strand: Reverse

Name: rbpE [H]

Synonym: STH2840

Alternate gene names: 51893978

Gene position: 3060911-3060651 (Counterclockwise)

Preceding gene: 51893982

Following gene: 51893977

Centisome position: 85.83

GC content: 67.43

Gene sequence:

>261_bases
GTGCCATTCAGCATCTACGTGGGAAACCTGCCCTGGAGCACCACCCCCGAGGACCTGCGTGCCCTCTTCGAGCCCTACGG
CGAGGTGGAGAACGCCCGCATCATCACCGACCGTGAAACCGGCCGCTCCCGCGGCTTCGGGTTCGTGGACATGGCTGACG
AGGAGGCGGCGCGCAGGGCCATCGCCGAGTTGCACAATTACGAATACGGGGGCCGGCCCCTCACCGTCAACGAGGCGCAG
GCCCGACAGGGCGGGATGTAG

Upstream 100 bases:

>100_bases
CGCGTGAACCCGTCCGGGCCGCGCACAATGAGGCTAAACCCGCAACAGGGCCCAGAGCATCCGATTGGATCGGCGCCCCG
ACAGGAGGAGGCAACGGATC

Downstream 100 bases:

>100_bases
CTCCTTCCGCCTACCCGACCGGTCTCCGGTCGGGTTTTTCGCGCCCTCTTGACCAAAGCGGTCGATTATGGTAGCCTCGT
TTTAGCCATTTATCACATTA

Product: glycine-rich RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MPFSIYVGNLPWSTTPEDLRALFEPYGEVENARIITDRETGRSRGFGFVDMADEEAARRAIAELHNYEYGGRPLTVNEAQ
ARQGGM

Sequences:

>Translated_86_residues
MPFSIYVGNLPWSTTPEDLRALFEPYGEVENARIITDRETGRSRGFGFVDMADEEAARRAIAELHNYEYGGRPLTVNEAQ
ARQGGM
>Mature_85_residues
PFSIYVGNLPWSTTPEDLRALFEPYGEVENARIITDRETGRSRGFGFVDMADEEAARRAIAELHNYEYGGRPLTVNEAQA
RQGGM

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI116734698, Length=84, Percent_Identity=41.6666666666667, Blast_Score=84, Evalue=2e-17,
Organism=Homo sapiens, GI116734696, Length=84, Percent_Identity=41.6666666666667, Blast_Score=84, Evalue=2e-17,
Organism=Homo sapiens, GI116734694, Length=84, Percent_Identity=41.6666666666667, Blast_Score=84, Evalue=2e-17,
Organism=Homo sapiens, GI35493811, Length=81, Percent_Identity=40.7407407407407, Blast_Score=83, Evalue=4e-17,
Organism=Homo sapiens, GI4757926, Length=81, Percent_Identity=40.7407407407407, Blast_Score=83, Evalue=4e-17,
Organism=Homo sapiens, GI221139802, Length=76, Percent_Identity=52.6315789473684, Blast_Score=75, Evalue=9e-15,
Organism=Homo sapiens, GI34577105, Length=75, Percent_Identity=52, Blast_Score=74, Evalue=2e-14,
Organism=Homo sapiens, GI34577107, Length=75, Percent_Identity=52, Blast_Score=74, Evalue=3e-14,
Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=40.7894736842105, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=40.7894736842105, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI188219591, Length=80, Percent_Identity=36.25, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI188219593, Length=80, Percent_Identity=36.25, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI4507499, Length=80, Percent_Identity=35, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI77695912, Length=80, Percent_Identity=35, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=50.6493506493506, Blast_Score=89, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=51.25, Blast_Score=87, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=48.0519480519481, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI212648574, Length=76, Percent_Identity=44.7368421052632, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17569937, Length=76, Percent_Identity=44.7368421052632, Blast_Score=65, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17553656, Length=83, Percent_Identity=37.3493975903614, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17554332, Length=79, Percent_Identity=36.7088607594937, Blast_Score=62, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=84, Percent_Identity=40.4761904761905, Blast_Score=67, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6319689, Length=85, Percent_Identity=41.1764705882353, Blast_Score=62, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582417, Length=81, Percent_Identity=37.037037037037, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI45550943, Length=81, Percent_Identity=37.037037037037, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24582419, Length=81, Percent_Identity=37.037037037037, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24582423, Length=81, Percent_Identity=37.037037037037, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24582421, Length=81, Percent_Identity=37.037037037037, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI19920866, Length=81, Percent_Identity=37.037037037037, Blast_Score=72, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24582412, Length=81, Percent_Identity=37.037037037037, Blast_Score=72, Evalue=8e-14,
Organism=Drosophila melanogaster, GI17137710, Length=83, Percent_Identity=39.7590361445783, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9667; Mature: 9536

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFSIYVGNLPWSTTPEDLRALFEPYGEVENARIITDRETGRSRGFGFVDMADEEAARRA
CCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEECCCHHHHHHH
IAELHNYEYGGRPLTVNEAQARQGGM
HHHHHCCCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
PFSIYVGNLPWSTTPEDLRALFEPYGEVENARIITDRETGRSRGFGFVDMADEEAARRA
CEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEECCCHHHHHHH
IAELHNYEYGGRPLTVNEAQARQGGM
HHHHHCCCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]