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The map label for this gene is yagI [H]

Identifier: 51893676

GI number: 51893676

Start: 2722174

End: 2722884

Strand: Reverse

Name: yagI [H]

Synonym: STH2538

Alternate gene names: 51893676

Gene position: 2722884-2722174 (Counterclockwise)

Preceding gene: 51893677

Following gene: 51893675

Centisome position: 76.35

GC content: 74.68

Gene sequence:

>711_bases
GTGGAGCGCGCCCTGGACGTCCTGCTCTGCTTCGCCGGCGAGCGGGGCGGCCTGGGCGTGACCCAAATCGCGGAGAAACT
GGGCCTGTACAAATCCACCGTGCACAGGATCCTGGCGGCGCTGGAGTCCCGCGGCTTCGTGCGCCGCGACCCGGCGACCG
GCCGGTACCACCTGGGGCTGAGGGCGCTGGAGCTGGCCCAGGTGTACCTGTCCTCCGGCGACCTGCCGACCATCGCCCTG
GGCGAGATGCTACAGCTGCGGGACCTGGCACAGGAGACCGTGAGCCTCTACGTCCGCGACGGCGCCGAGCGCGTCCGGGT
GCAGCGGGCGGAAGGCCCGCTGACGGTACGCCGCGTGGTGGGGCTGGGCGAGCGGCTGCCCCTGTACCTGGGCGCGTCGG
GCAAGGTCCTGCTGGCCTGGTGCCCGCCGGAGGAGCGGGCGCGCATCCTGGACGCGCAGCTGCCCGCCGGGTTCGACCGG
ACCGCCCTGGAGGCCCGGCTGGCGGAGGCCCGGGAGCAGGGCTGGGCCCTGAGCCTGGAGGAGCGGGAGGAGGGCGTGGC
GTCGGTGGCGGCGCCGGTCATCGACCGGGCGGGCCGCTGCGTCGCGGCCCTGGCCATCTCGGGTCCGGTGAGCCGGTTCA
CCGACGACCGCGTGGCCATGTTCAGCCGGGCCGTGCAGGCGACGGCCCGGTCCATCGGGATGAAGCTGTAG

Upstream 100 bases:

>100_bases
TTCCGGTTGTGGCCGGGTTGGGCTGACCGGTCCGCTGCCGGGGCGACTCCCTCAGAAGGGAGGGAGATGGCTGAAGGAGG
AAGGACAAACGATCCGGTCC

Downstream 100 bases:

>100_bases
CGGAAGCTGTTGGCGCAGCGCGGGGCCATGCCGTACGGGCATGGCCCTGTCCGTTGAGCGGGCAGTGCGATCACCCCTGC
TGCATGGGGCAATTCAGCGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MERALDVLLCFAGERGGLGVTQIAEKLGLYKSTVHRILAALESRGFVRRDPATGRYHLGLRALELAQVYLSSGDLPTIAL
GEMLQLRDLAQETVSLYVRDGAERVRVQRAEGPLTVRRVVGLGERLPLYLGASGKVLLAWCPPEERARILDAQLPAGFDR
TALEARLAEAREQGWALSLEEREEGVASVAAPVIDRAGRCVAALAISGPVSRFTDDRVAMFSRAVQATARSIGMKL

Sequences:

>Translated_236_residues
MERALDVLLCFAGERGGLGVTQIAEKLGLYKSTVHRILAALESRGFVRRDPATGRYHLGLRALELAQVYLSSGDLPTIAL
GEMLQLRDLAQETVSLYVRDGAERVRVQRAEGPLTVRRVVGLGERLPLYLGASGKVLLAWCPPEERARILDAQLPAGFDR
TALEARLAEAREQGWALSLEEREEGVASVAAPVIDRAGRCVAALAISGPVSRFTDDRVAMFSRAVQATARSIGMKL
>Mature_236_residues
MERALDVLLCFAGERGGLGVTQIAEKLGLYKSTVHRILAALESRGFVRRDPATGRYHLGLRALELAQVYLSSGDLPTIAL
GEMLQLRDLAQETVSLYVRDGAERVRVQRAEGPLTVRRVVGLGERLPLYLGASGKVLLAWCPPEERARILDAQLPAGFDR
TALEARLAEAREQGWALSLEEREEGVASVAAPVIDRAGRCVAALAISGPVSRFTDDRVAMFSRAVQATARSIGMKL

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=243, Percent_Identity=35.3909465020576, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI1788131, Length=230, Percent_Identity=33.4782608695652, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1786715, Length=242, Percent_Identity=33.8842975206612, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082359, Length=242, Percent_Identity=28.5123966942149, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789999, Length=250, Percent_Identity=30.8, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI145693096, Length=190, Percent_Identity=31.0526315789474, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788581, Length=239, Percent_Identity=27.6150627615063, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 25618; Mature: 25618

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED ; PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERALDVLLCFAGERGGLGVTQIAEKLGLYKSTVHRILAALESRGFVRRDPATGRYHLGL
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEHHH
RALELAQVYLSSGDLPTIALGEMLQLRDLAQETVSLYVRDGAERVRVQRAEGPLTVRRVV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCCHHHHHHH
GLGERLPLYLGASGKVLLAWCPPEERARILDAQLPAGFDRTALEARLAEAREQGWALSLE
CCCCCCCEEECCCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEHH
EREEGVASVAAPVIDRAGRCVAALAISGPVSRFTDDRVAMFSRAVQATARSIGMKL
HHHHHHHHHHHHHHHHCCCEEEEHHHCCCHHHHCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MERALDVLLCFAGERGGLGVTQIAEKLGLYKSTVHRILAALESRGFVRRDPATGRYHLGL
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEHHH
RALELAQVYLSSGDLPTIALGEMLQLRDLAQETVSLYVRDGAERVRVQRAEGPLTVRRVV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCCHHHHHHH
GLGERLPLYLGASGKVLLAWCPPEERARILDAQLPAGFDRTALEARLAEAREQGWALSLE
CCCCCCCEEECCCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEHH
EREEGVASVAAPVIDRAGRCVAALAISGPVSRFTDDRVAMFSRAVQATARSIGMKL
HHHHHHHHHHHHHHHHCCCEEEEHHHCCCHHHHCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]