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The map label for this gene is ykfA [H]

Identifier: 51893555

GI number: 51893555

Start: 2601004

End: 2601996

Strand: Reverse

Name: ykfA [H]

Synonym: STH2417

Alternate gene names: 51893555

Gene position: 2601996-2601004 (Counterclockwise)

Preceding gene: 51893556

Following gene: 51893554

Centisome position: 72.96

GC content: 71.0

Gene sequence:

>993_bases
GTGGCCGTTGGTGTGGTTAAGCCCCCTCGTCTACGGCGTGGCGACCTCGTGGGGGTGGTCGCGCCTTCGGGACCGGTGGA
CGCCCGCCGGGAGGCGGTGGAAGCCGGCATCCGGCGGCTGGAGGCGTATGGCTTCCGGGTGCGGACCGGGGAAGCTCTGT
GGGCCCGGGAGGGGGTCCGGGCGGGGGCAAGGGAGACCCAGCTCGCGGACCTGCACGCCATGTGGGCCGACCCGGAGGTG
AAGGCCATCTTCTGCGCCACCGGCGGCGTCACGGCCATCACGCTGGTGGATGGCCTGGACTACGACCTGATCGCACAGAA
CCCCAAGCCCTTCATCGGCATGAGCGACATCACCCTCCTGCAGGCGGCCATGCTGCGCCGCACGGGCCTCGTCAGTCTCC
ACGCGTCCGGACTCGCGGACGGGTTGGGCTCGCCTGACGCTGAACTGGAGGCTCCCTATCTGCTGCGGCTGTTGACCAAT
CCCGATCCACCTGGGCCGCTGCCCGACTGGGCCGGCGAGGTGCGGCCTGTACGGCCGGGGCGGGCCGAGAGCGCCGGACA
CGATCGGGGCGGTGCAAGCGGGCGGCAGGATAGCGGCGTGCGCGGGCGGTTGGTGGGCGGCTGCTGCAACTGCGTGCTGC
ACCTGCTGGGGACGTCCTACTGGCCGGACACGGAGGGGGCGATCCTCTTCCTGGAAGGGGTCAACCTGTTGACCTCGGCC
GTCCTGCGCGGACTGGCCCAGCTACGGCTCGCCGGGGCGTTGGACGGGGTGAAGGCGATCCTGTTCGGGCACATGGAAGG
CTGTTTCCGCGACCGGCCGTCCCCCTTGGAAGGGATGGCCCTGGCCGTGACAGAGGCGCTGGGCGACCTGGACCTGCCCG
TGTACCAGACCGAGGCCTTCGGTCACTGTGTGCCCAACGTCACGCTGCCCATCGGGGCGGTGGCATGCATCCGGGACGGG
CGGCTGGTGCTGGAGGAAGGCGCCGTCGTGTGA

Upstream 100 bases:

>100_bases
TGGCGGTGCTTCACGTGGGGGTACGGCCGAACGGGGTTGTGCCTCGTTTGGCGTGGCTCGGGCGTGCGTGAAACAGGCTT
GCAATCGGGGGTGATTCCCA

Downstream 100 bases:

>100_bases
CCGGGGCGCAGCCCGGTGGCCCGGGAATCTGCGTGTGACCTCCGCCGTCGGACCCGACCCTCCCAACCAGGCGGGAGCCG
GCAGGCGCAAGCGTGCCGGC

Product: putative muramoyltetrapeptide carboxypeptidase

Products: NA

Alternate protein names: LD-carboxypeptidase [H]

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MAVGVVKPPRLRRGDLVGVVAPSGPVDARREAVEAGIRRLEAYGFRVRTGEALWAREGVRAGARETQLADLHAMWADPEV
KAIFCATGGVTAITLVDGLDYDLIAQNPKPFIGMSDITLLQAAMLRRTGLVSLHASGLADGLGSPDAELEAPYLLRLLTN
PDPPGPLPDWAGEVRPVRPGRAESAGHDRGGASGRQDSGVRGRLVGGCCNCVLHLLGTSYWPDTEGAILFLEGVNLLTSA
VLRGLAQLRLAGALDGVKAILFGHMEGCFRDRPSPLEGMALAVTEALGDLDLPVYQTEAFGHCVPNVTLPIGAVACIRDG
RLVLEEGAVV

Sequences:

>Translated_330_residues
MAVGVVKPPRLRRGDLVGVVAPSGPVDARREAVEAGIRRLEAYGFRVRTGEALWAREGVRAGARETQLADLHAMWADPEV
KAIFCATGGVTAITLVDGLDYDLIAQNPKPFIGMSDITLLQAAMLRRTGLVSLHASGLADGLGSPDAELEAPYLLRLLTN
PDPPGPLPDWAGEVRPVRPGRAESAGHDRGGASGRQDSGVRGRLVGGCCNCVLHLLGTSYWPDTEGAILFLEGVNLLTSA
VLRGLAQLRLAGALDGVKAILFGHMEGCFRDRPSPLEGMALAVTEALGDLDLPVYQTEAFGHCVPNVTLPIGAVACIRDG
RLVLEEGAVV
>Mature_329_residues
AVGVVKPPRLRRGDLVGVVAPSGPVDARREAVEAGIRRLEAYGFRVRTGEALWAREGVRAGARETQLADLHAMWADPEVK
AIFCATGGVTAITLVDGLDYDLIAQNPKPFIGMSDITLLQAAMLRRTGLVSLHASGLADGLGSPDAELEAPYLLRLLTNP
DPPGPLPDWAGEVRPVRPGRAESAGHDRGGASGRQDSGVRGRLVGGCCNCVLHLLGTSYWPDTEGAILFLEGVNLLTSAV
LRGLAQLRLAGALDGVKAILFGHMEGCFRDRPSPLEGMALAVTEALGDLDLPVYQTEAFGHCVPNVTLPIGAVACIRDGR
LVLEEGAVV

Specific function: May be involved in the degradation of peptidoglycan by catalyzing the cleavage of the terminal D-alanine residue from cytoplasmic murein peptides [H]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 34755; Mature: 34624

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVGVVKPPRLRRGDLVGVVAPSGPVDARREAVEAGIRRLEAYGFRVRTGEALWAREGVR
CCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHH
AGARETQLADLHAMWADPEVKAIFCATGGVTAITLVDGLDYDLIAQNPKPFIGMSDITLL
CCCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
QAAMLRRTGLVSLHASGLADGLGSPDAELEAPYLLRLLTNPDPPGPLPDWAGEVRPVRPG
HHHHHHHCCCEEEECCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
RAESAGHDRGGASGRQDSGVRGRLVGGCCNCVLHLLGTSYWPDTEGAILFLEGVNLLTSA
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHH
VLRGLAQLRLAGALDGVKAILFGHMEGCFRDRPSPLEGMALAVTEALGDLDLPVYQTEAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEECCHH
GHCVPNVTLPIGAVACIRDGRLVLEEGAVV
CCCCCCCEECHHHEEEECCCCEEECCCCCC
>Mature Secondary Structure 
AVGVVKPPRLRRGDLVGVVAPSGPVDARREAVEAGIRRLEAYGFRVRTGEALWAREGVR
CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHH
AGARETQLADLHAMWADPEVKAIFCATGGVTAITLVDGLDYDLIAQNPKPFIGMSDITLL
CCCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
QAAMLRRTGLVSLHASGLADGLGSPDAELEAPYLLRLLTNPDPPGPLPDWAGEVRPVRPG
HHHHHHHCCCEEEECCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
RAESAGHDRGGASGRQDSGVRGRLVGGCCNCVLHLLGTSYWPDTEGAILFLEGVNLLTSA
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHH
VLRGLAQLRLAGALDGVKAILFGHMEGCFRDRPSPLEGMALAVTEALGDLDLPVYQTEAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEECCHH
GHCVPNVTLPIGAVACIRDGRLVLEEGAVV
CCCCCCCEECHHHEEEECCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]