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The map label for this gene is ypsC [H]

Identifier: 51893540

GI number: 51893540

Start: 2586363

End: 2587610

Strand: Reverse

Name: ypsC [H]

Synonym: STH2402

Alternate gene names: 51893540

Gene position: 2587610-2586363 (Counterclockwise)

Preceding gene: 51893541

Following gene: 51893539

Centisome position: 72.56

GC content: 71.96

Gene sequence:

>1248_bases
ATGTCCGACACGCAGCAGCTGACGCTGATCGCCACCGCCGCCATGGGGCTGGAGGCGGTGGTGGCGCGCGAGCTGAAGGG
CCTGGGCTACGACCAGCAGATCGTGGAGAACGGCCGGGTCCGGTTCCGGGGCGACGCGCGGGCGATCTGCCGGGCCAATC
TCTGGCTGCGCACGGCCGACCGGGTGCTGGTGGAGATGGCCTCGTTCCCGGCCACCACCTTCGAGGAACTCTTCCAGGGC
GTGCGGGCCGTCCCCTGGGAGGAATGGATCCCCGCCGAGGGCCGGTTCATCGTCAACGGCCGCTCCCACCAGTCGCAGCT
CTCCAGCGTGCCCGCCTGCCAGAAGGTGGCGGAGAAGGCGGTGGTGGAGCGGCTCCGGCAGCGGTACCCGCTGGAGTGGT
TCCCCAAGAGCGGCGCCCGTTATAGCATTGAAGTCTCCCTGCTGAAGGACGTGGCGACCGTCACTCTGGACACCACCGGG
CCGGGGCTGCACAAGCGGGGCTACCGGAAGCTGGTGACCGAGGCGCCGATCAAGGAGACGCTGGCCGCGGCGATGGTCCT
GCTCTCCCGCTGGCACCCGGACCGGCCGCTCCTGGACCCCTGCTGCGGCTCGGGCACCATCCCCATCGAGGCGGCCCTGA
TCGGCCACAACCTGGCGCCCGGGCTGCACCGGTCCTTCGACGCCGAGACGTGGGGGTGCATCCCGGCGCGCCTCTGGGAC
GAGGCCCGGGAGGAAGGCTTCGACCTGGCCGACTATGACCGGCCGCTGGATATCCGTGGCTCGGACATTGACCCCGGGGC
ACTGGAGCTGGCCGCGCACCACCTCAGGGCGGCGGGGCTCTCCCGGTCCGTCCGGCTGGAGCGGAAGCCGCTGCAGGAGA
TCGGGCGGGACGCGCCTTACGGCTACCTGATCACCAACCCGCCCTACGGGGAGCGGATGGGGGAGCGGGAGGCCGTGGAG
GCGCTGTACCGGGACATCGGCCGCCTGGTCCGGAGGCTGCAGGACTGGTCGGCCTTCGTCATCACCCCGCACAAGGGGTT
CGAGCGGCACTTCGGCCGCCGGGCCGACCGGAAGCGCAAGCTGTACAACGGCCGCATCGAGTGCGACCTGTACCAGTACG
AGGGGCCGTACCATGGCCGTCCGGTCCCGGGGACAGGGGGCGGCCCTGCCTCCGGGGAGTCCCAAGGCCGGCCTGCCCCA
GGGGCGGGCCGTGCGCGCCCTGCTCCCGGGGGCGGGGATGATCGCTGA

Upstream 100 bases:

>100_bases
CGCGCAGCGTCCGGCTGGTCACCCACAAGGACGTGACTGCGGCTGACGTGGAGCTGGCCCTCGACGCCATCGCCCGCACG
GTGAAGGCGGGGCCCTAGCC

Downstream 100 bases:

>100_bases
ACAGGAGGTGGTCCCGTGGACCTGTTCTCGTGGGCCGCGGCGCAGCAGGCGGCGCAAAGCGCGCCGCTGGCCGCCCGGAT
GCGCCCGCAGACCCTGGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MSDTQQLTLIATAAMGLEAVVARELKGLGYDQQIVENGRVRFRGDARAICRANLWLRTADRVLVEMASFPATTFEELFQG
VRAVPWEEWIPAEGRFIVNGRSHQSQLSSVPACQKVAEKAVVERLRQRYPLEWFPKSGARYSIEVSLLKDVATVTLDTTG
PGLHKRGYRKLVTEAPIKETLAAAMVLLSRWHPDRPLLDPCCGSGTIPIEAALIGHNLAPGLHRSFDAETWGCIPARLWD
EAREEGFDLADYDRPLDIRGSDIDPGALELAAHHLRAAGLSRSVRLERKPLQEIGRDAPYGYLITNPPYGERMGEREAVE
ALYRDIGRLVRRLQDWSAFVITPHKGFERHFGRRADRKRKLYNGRIECDLYQYEGPYHGRPVPGTGGGPASGESQGRPAP
GAGRARPAPGGGDDR

Sequences:

>Translated_415_residues
MSDTQQLTLIATAAMGLEAVVARELKGLGYDQQIVENGRVRFRGDARAICRANLWLRTADRVLVEMASFPATTFEELFQG
VRAVPWEEWIPAEGRFIVNGRSHQSQLSSVPACQKVAEKAVVERLRQRYPLEWFPKSGARYSIEVSLLKDVATVTLDTTG
PGLHKRGYRKLVTEAPIKETLAAAMVLLSRWHPDRPLLDPCCGSGTIPIEAALIGHNLAPGLHRSFDAETWGCIPARLWD
EAREEGFDLADYDRPLDIRGSDIDPGALELAAHHLRAAGLSRSVRLERKPLQEIGRDAPYGYLITNPPYGERMGEREAVE
ALYRDIGRLVRRLQDWSAFVITPHKGFERHFGRRADRKRKLYNGRIECDLYQYEGPYHGRPVPGTGGGPASGESQGRPAP
GAGRARPAPGGGDDR
>Mature_414_residues
SDTQQLTLIATAAMGLEAVVARELKGLGYDQQIVENGRVRFRGDARAICRANLWLRTADRVLVEMASFPATTFEELFQGV
RAVPWEEWIPAEGRFIVNGRSHQSQLSSVPACQKVAEKAVVERLRQRYPLEWFPKSGARYSIEVSLLKDVATVTLDTTGP
GLHKRGYRKLVTEAPIKETLAAAMVLLSRWHPDRPLLDPCCGSGTIPIEAALIGHNLAPGLHRSFDAETWGCIPARLWDE
AREEGFDLADYDRPLDIRGSDIDPGALELAAHHLRAAGLSRSVRLERKPLQEIGRDAPYGYLITNPPYGERMGEREAVEA
LYRDIGRLVRRLQDWSAFVITPHKGFERHFGRRADRKRKLYNGRIECDLYQYEGPYHGRPVPGTGGGPASGESQGRPAPG
AGRARPAPGGGDDR

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=378, Percent_Identity=32.8042328042328, Blast_Score=179, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 46087; Mature: 45956

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTQQLTLIATAAMGLEAVVARELKGLGYDQQIVENGRVRFRGDARAICRANLWLRTAD
CCCCHHEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEECCCHHHHHHHHHHHHHH
RVLVEMASFPATTFEELFQGVRAVPWEEWIPAEGRFIVNGRSHQSQLSSVPACQKVAEKA
HHHHHHHHCCCHHHHHHHHHHHCCCHHHCCCCCCEEEECCCCHHHHHHCCHHHHHHHHHH
VVERLRQRYPLEWFPKSGARYSIEVSLLKDVATVTLDTTGPGLHKRGYRKLVTEAPIKET
HHHHHHHHCCCEEECCCCCEEEEEHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCHHHH
LAAAMVLLSRWHPDRPLLDPCCGSGTIPIEAALIGHNLAPGLHRSFDAETWGCIPARLWD
HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHEECCCCCCCCHHCCCCCCCCCCCHHHHHH
EAREEGFDLADYDRPLDIRGSDIDPGALELAAHHLRAAGLSRSVRLERKPLQEIGRDAPY
HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
GYLITNPPYGERMGEREAVEALYRDIGRLVRRLQDWSAFVITPHKGFERHFGRRADRKRK
CEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH
LYNGRIECDLYQYEGPYHGRPVPGTGGGPASGESQGRPAPGAGRARPAPGGGDDR
HHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDTQQLTLIATAAMGLEAVVARELKGLGYDQQIVENGRVRFRGDARAICRANLWLRTAD
CCCHHEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEECCCHHHHHHHHHHHHHH
RVLVEMASFPATTFEELFQGVRAVPWEEWIPAEGRFIVNGRSHQSQLSSVPACQKVAEKA
HHHHHHHHCCCHHHHHHHHHHHCCCHHHCCCCCCEEEECCCCHHHHHHCCHHHHHHHHHH
VVERLRQRYPLEWFPKSGARYSIEVSLLKDVATVTLDTTGPGLHKRGYRKLVTEAPIKET
HHHHHHHHCCCEEECCCCCEEEEEHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCHHHH
LAAAMVLLSRWHPDRPLLDPCCGSGTIPIEAALIGHNLAPGLHRSFDAETWGCIPARLWD
HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHEECCCCCCCCHHCCCCCCCCCCCHHHHHH
EAREEGFDLADYDRPLDIRGSDIDPGALELAAHHLRAAGLSRSVRLERKPLQEIGRDAPY
HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
GYLITNPPYGERMGEREAVEALYRDIGRLVRRLQDWSAFVITPHKGFERHFGRRADRKRK
CEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH
LYNGRIECDLYQYEGPYHGRPVPGTGGGPASGESQGRPAPGAGRARPAPGGGDDR
HHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]