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The map label for this gene is yrvN [H]

Identifier: 51893539

GI number: 51893539

Start: 2585031

End: 2586347

Strand: Reverse

Name: yrvN [H]

Synonym: STH2401

Alternate gene names: 51893539

Gene position: 2586347-2585031 (Counterclockwise)

Preceding gene: 51893540

Following gene: 51893538

Centisome position: 72.53

GC content: 72.44

Gene sequence:

>1317_bases
GTGGACCTGTTCTCGTGGGCCGCGGCGCAGCAGGCGGCGCAAAGCGCGCCGCTGGCCGCCCGGATGCGCCCGCAGACCCT
GGATGAGTTCGTGGGCCAGGAGCACCTGGTGGGCCCCGGCCGCTTCCTGCGCCGGGCCCTGGAGGCAGGCCACCTGCCCT
CCTGCATCCTCTTCGGCCCGCCGGGCACCGGCAAGACCACCCTCGCCCGGCTGATGGCGAGCAACGTGAACGCCCACTTC
GAGCAGCTGAACGCGGTGACTTCGGGCGTTCAGGACATCCGCCGCATCGTCGACGAGGCCCGCGCCCGCCTGGCGGAGCG
CGGCCAGAAGACCGTCGTCTTCATCGACGAGATCCACCGCTGGCGCAAGGACCAGCAGGACGCGCTGCTCCCCCACGTGG
AGGACGGGCTGATCACGCTGGTGGGCGCGACCACCCAGAACCCGCTGGTCTCGGTGAACGCGCCGCTGGTGAGCCGCACC
CGGATCTTCGAGCTGAAGCCGCTCAGCGACGAGCACATCGCCCACCTGCTGGACCGGGCCCTGCGCACGCCCGGGCGGGG
CCTGGGCAACTACAACGCCACGGTCACTCCCGAGGCGATGGAGCACCTGGTGCGCATGGCCGGCGGCGATGCCCGGGCCG
CGCTCAACGCCCTGGAGCTGGCGGTGCTGCTCACCCAGCCGGACGAGCAGGGGCGCCGGACGGTGACCCTGGAGACGGCG
GAGGAGGCCCTCCTGAAGCGGGCGGTGGTCTACGACCACGACGGGGACGAGCACTACCACGTGGCCTCGGCGCTGATCAA
GTCGATCCGGGGCTCGGATCCCGACGCCGCGCTCTACTGGCTGGCGCGGATGCTCTACGCCGGCGAGGACCCCCGGTTCA
TCGCCCGGCGGCTGGTGATCTCCGCGGCGGAGGACATCGGCCTGGCCGACCCCCAGGCCCTGGTGATCGCCCAGGCGGCG
GCGGACGCGGTGTCGTTCATCGGCATGCCCGAGGGGCGCATCCCCCTGGCCGAGGCGGTGGTCTACCTCGCCTGCGCGCC
CAAGTCCAACAGCGCCTACCTGGCCATCGACCGGGCCCTGGCGGTGGTGGAGCGGGAGAAAACGCCACCGGTGCCCAATC
ACCTGAAGGACACCGGCTACGGCTCGGACCAGCGGCTGGGTTACGGGAAGGGATATCAATACCCCCACGACTTCCCCGGC
GCCTGGGTGGAGCAGCGCTACCTGCCGGAGGGCGTGGACGGCCCCTTCTGGGAGCCCAAGGGGTACGGCCGGGAGGCGGA
GCTCGCCCGGCTGCTGCGGGAGCGGCGCGGGCGCTGA

Upstream 100 bases:

>100_bases
CCCTGCCTCCGGGGAGTCCCAAGGCCGGCCTGCCCCAGGGGCGGGCCGTGCGCGCCCTGCTCCCGGGGGCGGGGATGATC
GCTGAACAGGAGGTGGTCCC

Downstream 100 bases:

>100_bases
GCGGGCGCGGGGGCTGCATCCGGCGCCGGGCGGCCACGGGTCCGCGCGGCCAGAGCGCCTGGAGGATGACACGGGCGGGT
GCCGGTGCATGGCACCAAGG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MDLFSWAAAQQAAQSAPLAARMRPQTLDEFVGQEHLVGPGRFLRRALEAGHLPSCILFGPPGTGKTTLARLMASNVNAHF
EQLNAVTSGVQDIRRIVDEARARLAERGQKTVVFIDEIHRWRKDQQDALLPHVEDGLITLVGATTQNPLVSVNAPLVSRT
RIFELKPLSDEHIAHLLDRALRTPGRGLGNYNATVTPEAMEHLVRMAGGDARAALNALELAVLLTQPDEQGRRTVTLETA
EEALLKRAVVYDHDGDEHYHVASALIKSIRGSDPDAALYWLARMLYAGEDPRFIARRLVISAAEDIGLADPQALVIAQAA
ADAVSFIGMPEGRIPLAEAVVYLACAPKSNSAYLAIDRALAVVEREKTPPVPNHLKDTGYGSDQRLGYGKGYQYPHDFPG
AWVEQRYLPEGVDGPFWEPKGYGREAELARLLRERRGR

Sequences:

>Translated_438_residues
MDLFSWAAAQQAAQSAPLAARMRPQTLDEFVGQEHLVGPGRFLRRALEAGHLPSCILFGPPGTGKTTLARLMASNVNAHF
EQLNAVTSGVQDIRRIVDEARARLAERGQKTVVFIDEIHRWRKDQQDALLPHVEDGLITLVGATTQNPLVSVNAPLVSRT
RIFELKPLSDEHIAHLLDRALRTPGRGLGNYNATVTPEAMEHLVRMAGGDARAALNALELAVLLTQPDEQGRRTVTLETA
EEALLKRAVVYDHDGDEHYHVASALIKSIRGSDPDAALYWLARMLYAGEDPRFIARRLVISAAEDIGLADPQALVIAQAA
ADAVSFIGMPEGRIPLAEAVVYLACAPKSNSAYLAIDRALAVVEREKTPPVPNHLKDTGYGSDQRLGYGKGYQYPHDFPG
AWVEQRYLPEGVDGPFWEPKGYGREAELARLLRERRGR
>Mature_438_residues
MDLFSWAAAQQAAQSAPLAARMRPQTLDEFVGQEHLVGPGRFLRRALEAGHLPSCILFGPPGTGKTTLARLMASNVNAHF
EQLNAVTSGVQDIRRIVDEARARLAERGQKTVVFIDEIHRWRKDQQDALLPHVEDGLITLVGATTQNPLVSVNAPLVSRT
RIFELKPLSDEHIAHLLDRALRTPGRGLGNYNATVTPEAMEHLVRMAGGDARAALNALELAVLLTQPDEQGRRTVTLETA
EEALLKRAVVYDHDGDEHYHVASALIKSIRGSDPDAALYWLARMLYAGEDPRFIARRLVISAAEDIGLADPQALVIAQAA
ADAVSFIGMPEGRIPLAEAVVYLACAPKSNSAYLAIDRALAVVEREKTPPVPNHLKDTGYGSDQRLGYGKGYQYPHDFPG
AWVEQRYLPEGVDGPFWEPKGYGREAELARLLRERRGR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=43.5079726651481, Blast_Score=325, Evalue=6e-89,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=39.8633257403189, Blast_Score=278, Evalue=1e-74,
Organism=Homo sapiens, GI4506491, Length=250, Percent_Identity=28.8, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI31881687, Length=250, Percent_Identity=28.8, Blast_Score=82, Evalue=9e-16,
Organism=Escherichia coli, GI1787119, Length=418, Percent_Identity=44.7368421052632, Blast_Score=359, Evalue=1e-100,
Organism=Caenorhabditis elegans, GI71986063, Length=225, Percent_Identity=28, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=428, Percent_Identity=36.6822429906542, Blast_Score=270, Evalue=4e-73,
Organism=Saccharomyces cerevisiae, GI6324039, Length=297, Percent_Identity=26.2626262626263, Blast_Score=80, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 48108; Mature: 48108

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFSWAAAQQAAQSAPLAARMRPQTLDEFVGQEHLVGPGRFLRRALEAGHLPSCILFGP
CCCHHHHHHHHHHHCCCCHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEECC
PGTGKTTLARLMASNVNAHFEQLNAVTSGVQDIRRIVDEARARLAERGQKTVVFIDEIHR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
WRKDQQDALLPHVEDGLITLVGATTQNPLVSVNAPLVSRTRIFELKPLSDEHIAHLLDRA
HHCCCHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHH
LRTPGRGLGNYNATVTPEAMEHLVRMAGGDARAALNALELAVLLTQPDEQGRRTVTLETA
HCCCCCCCCCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCCCEEEEEHHH
EEALLKRAVVYDHDGDEHYHVASALIKSIRGSDPDAALYWLARMLYAGEDPRFIARRLVI
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
SAAEDIGLADPQALVIAQAAADAVSFIGMPEGRIPLAEAVVYLACAPKSNSAYLAIDRAL
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEEECCCCCCEEEEHHHHH
AVVEREKTPPVPNHLKDTGYGSDQRLGYGKGYQYPHDFPGAWVEQRYLPEGVDGPFWEPK
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
GYGREAELARLLRERRGR
CCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLFSWAAAQQAAQSAPLAARMRPQTLDEFVGQEHLVGPGRFLRRALEAGHLPSCILFGP
CCCHHHHHHHHHHHCCCCHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEECC
PGTGKTTLARLMASNVNAHFEQLNAVTSGVQDIRRIVDEARARLAERGQKTVVFIDEIHR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
WRKDQQDALLPHVEDGLITLVGATTQNPLVSVNAPLVSRTRIFELKPLSDEHIAHLLDRA
HHCCCHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHH
LRTPGRGLGNYNATVTPEAMEHLVRMAGGDARAALNALELAVLLTQPDEQGRRTVTLETA
HCCCCCCCCCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCCCEEEEEHHH
EEALLKRAVVYDHDGDEHYHVASALIKSIRGSDPDAALYWLARMLYAGEDPRFIARRLVI
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
SAAEDIGLADPQALVIAQAAADAVSFIGMPEGRIPLAEAVVYLACAPKSNSAYLAIDRAL
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEEECCCCCCEEEEHHHHH
AVVEREKTPPVPNHLKDTGYGSDQRLGYGKGYQYPHDFPGAWVEQRYLPEGVDGPFWEPK
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
GYGREAELARLLRERRGR
CCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]