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The map label for this gene is ykfC [H]

Identifier: 51893375

GI number: 51893375

Start: 2400637

End: 2401557

Strand: Reverse

Name: ykfC [H]

Synonym: STH2237

Alternate gene names: 51893375

Gene position: 2401557-2400637 (Counterclockwise)

Preceding gene: 51893376

Following gene: 51893374

Centisome position: 67.34

GC content: 63.74

Gene sequence:

>921_bases
GTGGAGGAAGGGTACGACTGGGTCGTGGACATGGACCTGGAGAAGTTCTTCGACCGGGTCAACCACGACGTGCTGATGGC
CCGCGTGGCGCGGCGGGTAACGGATAAGCGTGTGCTGCGGCTGATCCGGCGGTACTTACAGGCCGGGGTCATGCTGAACG
GGGTGGTCGTGGCGACGGAGGAAGGGACGCCGCAGGGCGGTCCGCTGAGTCCGCTGCTGGCGAACATCCTGCTGGATGAC
CTCGACAAGGAGCTGGAGCGCCGTGGCCACCACTTCGTCCGGTACGCCGATGACTGCAACATCTACGTCCGCAGCAAGCG
GGCGGGAGAACGGGTCTACAGGAGCGTGCGCCACTTCCTGCAGGAGCGGTTACGGCTGAAGGTCAACGAGGAGAAGAGCG
CAGTGGACCGGCCGTGGAAGCGGCAGTTCCTCGGGTTTAGCTTCTACAAGCACCGGGGAGTGCGCATCCGGCTGGCCCCG
AAGAGCCTGAAACGCGTGAAGGACAAGCTCCGCACGCTGACGGACCGCAACCGCAGCCAGAGCATGGAGGACCGAATCCG
GTGCCTGAATGCCTACTTGCGGGGCTGGGTTGGGTACTATGCGCTCTCCGATGCCAGGTCAGCCTTTGAAAGACTCGAAG
GATGGCTGAAGCGTCGGCTGCGAGCATGCGTATGGAGGCAGTGGAAGCGTGTACGCACGCGCTTTCGGGAGTTACGCGCC
CTCGGTTTGCCCGAATGGGTAGTCTACCAACTCGCCAACAGCCGCAAAGGCCCGTGGCGAATGGCAGGTGGCCCACTAAA
CAGCGCCCTGGGCAACGCCTACTGGCGTGCCCAGGGGCTGATAAGCCTGACCGAATGCTATGAAGCGACTCGTCAATCCT
GGCGAACCGCCGGATGCGGACCCGCATGTCCGGTGGTGTGA

Upstream 100 bases:

>100_bases
ACATGCTGGCCGCCCTGAAACGGGTGGAGCGGAACGGAGGCGCCCAGGCTTTCGGCCGGGGCGGCGGGGTCATGATGCGG
TCAGGAAGGCACGTCAGTAC

Downstream 100 bases:

>100_bases
GAGGACGGGGGTTAGCCGCCCCCTCCTACTCGATTTCGTCACGGTGCACGTCTCGCTGCGGCAGGCGATCGACCTGGTCA
CCGCCGACCGGGGCAGGCGG

Product: group II intron-encoding maturase variant

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVVATEEGTPQGGPLSPLLANILLDD
LDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVRHFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAP
KSLKRVKDKLRTLTDRNRSQSMEDRIRCLNAYLRGWVGYYALSDARSAFERLEGWLKRRLRACVWRQWKRVRTRFRELRA
LGLPEWVVYQLANSRKGPWRMAGGPLNSALGNAYWRAQGLISLTECYEATRQSWRTAGCGPACPVV

Sequences:

>Translated_306_residues
MEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVVATEEGTPQGGPLSPLLANILLDD
LDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVRHFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAP
KSLKRVKDKLRTLTDRNRSQSMEDRIRCLNAYLRGWVGYYALSDARSAFERLEGWLKRRLRACVWRQWKRVRTRFRELRA
LGLPEWVVYQLANSRKGPWRMAGGPLNSALGNAYWRAQGLISLTECYEATRQSWRTAGCGPACPVV
>Mature_306_residues
MEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVVATEEGTPQGGPLSPLLANILLDD
LDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVRHFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAP
KSLKRVKDKLRTLTDRNRSQSMEDRIRCLNAYLRGWVGYYALSDARSAFERLEGWLKRRLRACVWRQWKRVRTRFRELRA
LGLPEWVVYQLANSRKGPWRMAGGPLNSALGNAYWRAQGLISLTECYEATRQSWRTAGCGPACPVV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=128, Percent_Identity=33.59375, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 35972; Mature: 35972

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVVATE
CCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEEC
EGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVRHFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHH
QERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQ
HHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCHHHC
SMEDRIRCLNAYLRGWVGYYALSDARSAFERLEGWLKRRLRACVWRQWKRVRTRFRELRA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLPEWVVYQLANSRKGPWRMAGGPLNSALGNAYWRAQGLISLTECYEATRQSWRTAGCG
CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PACPVV
CCCCCC
>Mature Secondary Structure
MEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVVATE
CCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEEC
EGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVRHFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHH
QERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQ
HHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCHHHC
SMEDRIRCLNAYLRGWVGYYALSDARSAFERLEGWLKRRLRACVWRQWKRVRTRFRELRA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLPEWVVYQLANSRKGPWRMAGGPLNSALGNAYWRAQGLISLTECYEATRQSWRTAGCG
CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PACPVV
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]