| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
Click here to switch to the map view.
The map label for this gene is yvyE [H]
Identifier: 51893271
GI number: 51893271
Start: 2280149
End: 2280844
Strand: Reverse
Name: yvyE [H]
Synonym: STH2133
Alternate gene names: 51893271
Gene position: 2280844-2280149 (Counterclockwise)
Preceding gene: 51893273
Following gene: 51893270
Centisome position: 63.96
GC content: 70.83
Gene sequence:
>696_bases GTGTGCGGGGGACACTCCTCGAATTGTACCCTGTCCACTCTCAACGCGAGGGGTGAACGGGTGTCGTATCGCACGGTGGC CGGCCGCGGTCAGGCTGAGATCGTCATCAAGAAGTCGCGCTTCATCGCCCACGTGGCCCCGGTCGCCTCGGAGGAGGCGG CATGGGCCTTTATCAACGAGATCCGCGCGGCCCATTCGGACGCGACGCACAACTGCTTCGCCTTCACCGCCGGCGCCGTC CAGCGCATGTCCGACGACGGCGAGCCCAGCGGAACGGCCGGGCGCCCCATCTTCGAGGTCCTGGAGAAGCAGGGGCTGTC CGACACCGCCATCGTGGTCACCCGCTACTTCGGCGGGATCCTGCTGGGGGCCGGCGGGCTGGTGCGCGCCTATTCCCAGG CGGCCGCGGCGGGCGTGGAGGCGGCCGGCGTGGCCGAGGCGCTCCCCGCCGTGGACCTGCGGGTGCGGGTGGACTATGCG CTGCTGGGCAGGGTGCAGTACCTGCTGCAGCAGCACGGGGCGCTGACCCTGCAGACCGACTTCGGCCAGGAGGTCGTGAT CGTCTTCCGGGTGCTGGAGACCGACCGCGACCGCGTGACAGCGGAGCTGGCGGAGGCGTCTGCGGGCCGGATCGCCGTCG AGCCGGTTGGCACCGCGCTGGTGGGGCCCGACCTGCAGCCGATCCATCGGCAATAG
Upstream 100 bases:
>100_bases CGGAAAAGATCGATTCCGTCGTGTGCATCCGGCAAAGGCCATCCCTCCGCAGGTGATCCCATGGCTTCTTTGATTCCATT GCTTCTTTAGTCTGAGGCAG
Downstream 100 bases:
>100_bases GATGGAGATGGGTTGCAGAGACCATACCGCGCGGCTACGTCAACGGTTATAATGTAAACCGTGTGTCCGCGAGCGGGATG CTCGCGAGATGACCGGTCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 231; Mature: 231
Protein sequence:
>231_residues MCGGHSSNCTLSTLNARGERVSYRTVAGRGQAEIVIKKSRFIAHVAPVASEEAAWAFINEIRAAHSDATHNCFAFTAGAV QRMSDDGEPSGTAGRPIFEVLEKQGLSDTAIVVTRYFGGILLGAGGLVRAYSQAAAAGVEAAGVAEALPAVDLRVRVDYA LLGRVQYLLQQHGALTLQTDFGQEVVIVFRVLETDRDRVTAELAEASAGRIAVEPVGTALVGPDLQPIHRQ
Sequences:
>Translated_231_residues MCGGHSSNCTLSTLNARGERVSYRTVAGRGQAEIVIKKSRFIAHVAPVASEEAAWAFINEIRAAHSDATHNCFAFTAGAV QRMSDDGEPSGTAGRPIFEVLEKQGLSDTAIVVTRYFGGILLGAGGLVRAYSQAAAAGVEAAGVAEALPAVDLRVRVDYA LLGRVQYLLQQHGALTLQTDFGQEVVIVFRVLETDRDRVTAELAEASAGRIAVEPVGTALVGPDLQPIHRQ >Mature_231_residues MCGGHSSNCTLSTLNARGERVSYRTVAGRGQAEIVIKKSRFIAHVAPVASEEAAWAFINEIRAAHSDATHNCFAFTAGAV QRMSDDGEPSGTAGRPIFEVLEKQGLSDTAIVVTRYFGGILLGAGGLVRAYSQAAAAGVEAAGVAEALPAVDLRVRVDYA LLGRVQYLLQQHGALTLQTDFGQEVVIVFRVLETDRDRVTAELAEASAGRIAVEPVGTALVGPDLQPIHRQ
Specific function: Unknown
COG id: COG1739
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IMPACT family [H]
Homologues:
Organism=Escherichia coli, GI87082338, Length=181, Percent_Identity=36.4640883977901, Blast_Score=89, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR020568 - InterPro: IPR000640 - InterPro: IPR015796 - InterPro: IPR015269 - InterPro: IPR020569 - InterPro: IPR001498 [H]
Pfam domain/function: PF09186 DUF1949; PF01205 UPF0029 [H]
EC number: NA
Molecular weight: Translated: 24426; Mature: 24426
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCGGHSSNCTLSTLNARGERVSYRTVAGRGQAEIVIKKSRFIAHVAPVASEEAAWAFINE CCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCHHEEECCCCCCCHHHHHHHHH IRAAHSDATHNCFAFTAGAVQRMSDDGEPSGTAGRPIFEVLEKQGLSDTAIVVTRYFGGI HHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH LLGAGGLVRAYSQAAAAGVEAAGVAEALPAVDLRVRVDYALLGRVQYLLQQHGALTLQTD EECCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEEC FGQEVVIVFRVLETDRDRVTAELAEASAGRIAVEPVGTALVGPDLQPIHRQ CCCEEEEEHHHHHCCHHHHHHHHHHCCCCEEEECCCCCEEECCCCCCCCCC >Mature Secondary Structure MCGGHSSNCTLSTLNARGERVSYRTVAGRGQAEIVIKKSRFIAHVAPVASEEAAWAFINE CCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCHHEEECCCCCCCHHHHHHHHH IRAAHSDATHNCFAFTAGAVQRMSDDGEPSGTAGRPIFEVLEKQGLSDTAIVVTRYFGGI HHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH LLGAGGLVRAYSQAAAAGVEAAGVAEALPAVDLRVRVDYALLGRVQYLLQQHGALTLQTD EECCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEEC FGQEVVIVFRVLETDRDRVTAELAEASAGRIAVEPVGTALVGPDLQPIHRQ CCCEEEEEHHHHHCCHHHHHHHHHHCCCCEEEECCCCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 3141378; 8313894 [H]