Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is yvyE [H]

Identifier: 51893271

GI number: 51893271

Start: 2280149

End: 2280844

Strand: Reverse

Name: yvyE [H]

Synonym: STH2133

Alternate gene names: 51893271

Gene position: 2280844-2280149 (Counterclockwise)

Preceding gene: 51893273

Following gene: 51893270

Centisome position: 63.96

GC content: 70.83

Gene sequence:

>696_bases
GTGTGCGGGGGACACTCCTCGAATTGTACCCTGTCCACTCTCAACGCGAGGGGTGAACGGGTGTCGTATCGCACGGTGGC
CGGCCGCGGTCAGGCTGAGATCGTCATCAAGAAGTCGCGCTTCATCGCCCACGTGGCCCCGGTCGCCTCGGAGGAGGCGG
CATGGGCCTTTATCAACGAGATCCGCGCGGCCCATTCGGACGCGACGCACAACTGCTTCGCCTTCACCGCCGGCGCCGTC
CAGCGCATGTCCGACGACGGCGAGCCCAGCGGAACGGCCGGGCGCCCCATCTTCGAGGTCCTGGAGAAGCAGGGGCTGTC
CGACACCGCCATCGTGGTCACCCGCTACTTCGGCGGGATCCTGCTGGGGGCCGGCGGGCTGGTGCGCGCCTATTCCCAGG
CGGCCGCGGCGGGCGTGGAGGCGGCCGGCGTGGCCGAGGCGCTCCCCGCCGTGGACCTGCGGGTGCGGGTGGACTATGCG
CTGCTGGGCAGGGTGCAGTACCTGCTGCAGCAGCACGGGGCGCTGACCCTGCAGACCGACTTCGGCCAGGAGGTCGTGAT
CGTCTTCCGGGTGCTGGAGACCGACCGCGACCGCGTGACAGCGGAGCTGGCGGAGGCGTCTGCGGGCCGGATCGCCGTCG
AGCCGGTTGGCACCGCGCTGGTGGGGCCCGACCTGCAGCCGATCCATCGGCAATAG

Upstream 100 bases:

>100_bases
CGGAAAAGATCGATTCCGTCGTGTGCATCCGGCAAAGGCCATCCCTCCGCAGGTGATCCCATGGCTTCTTTGATTCCATT
GCTTCTTTAGTCTGAGGCAG

Downstream 100 bases:

>100_bases
GATGGAGATGGGTTGCAGAGACCATACCGCGCGGCTACGTCAACGGTTATAATGTAAACCGTGTGTCCGCGAGCGGGATG
CTCGCGAGATGACCGGTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MCGGHSSNCTLSTLNARGERVSYRTVAGRGQAEIVIKKSRFIAHVAPVASEEAAWAFINEIRAAHSDATHNCFAFTAGAV
QRMSDDGEPSGTAGRPIFEVLEKQGLSDTAIVVTRYFGGILLGAGGLVRAYSQAAAAGVEAAGVAEALPAVDLRVRVDYA
LLGRVQYLLQQHGALTLQTDFGQEVVIVFRVLETDRDRVTAELAEASAGRIAVEPVGTALVGPDLQPIHRQ

Sequences:

>Translated_231_residues
MCGGHSSNCTLSTLNARGERVSYRTVAGRGQAEIVIKKSRFIAHVAPVASEEAAWAFINEIRAAHSDATHNCFAFTAGAV
QRMSDDGEPSGTAGRPIFEVLEKQGLSDTAIVVTRYFGGILLGAGGLVRAYSQAAAAGVEAAGVAEALPAVDLRVRVDYA
LLGRVQYLLQQHGALTLQTDFGQEVVIVFRVLETDRDRVTAELAEASAGRIAVEPVGTALVGPDLQPIHRQ
>Mature_231_residues
MCGGHSSNCTLSTLNARGERVSYRTVAGRGQAEIVIKKSRFIAHVAPVASEEAAWAFINEIRAAHSDATHNCFAFTAGAV
QRMSDDGEPSGTAGRPIFEVLEKQGLSDTAIVVTRYFGGILLGAGGLVRAYSQAAAAGVEAAGVAEALPAVDLRVRVDYA
LLGRVQYLLQQHGALTLQTDFGQEVVIVFRVLETDRDRVTAELAEASAGRIAVEPVGTALVGPDLQPIHRQ

Specific function: Unknown

COG id: COG1739

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IMPACT family [H]

Homologues:

Organism=Escherichia coli, GI87082338, Length=181, Percent_Identity=36.4640883977901, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009022
- InterPro:   IPR020568
- InterPro:   IPR000640
- InterPro:   IPR015796
- InterPro:   IPR015269
- InterPro:   IPR020569
- InterPro:   IPR001498 [H]

Pfam domain/function: PF09186 DUF1949; PF01205 UPF0029 [H]

EC number: NA

Molecular weight: Translated: 24426; Mature: 24426

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCGGHSSNCTLSTLNARGERVSYRTVAGRGQAEIVIKKSRFIAHVAPVASEEAAWAFINE
CCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCHHEEECCCCCCCHHHHHHHHH
IRAAHSDATHNCFAFTAGAVQRMSDDGEPSGTAGRPIFEVLEKQGLSDTAIVVTRYFGGI
HHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
LLGAGGLVRAYSQAAAAGVEAAGVAEALPAVDLRVRVDYALLGRVQYLLQQHGALTLQTD
EECCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEEC
FGQEVVIVFRVLETDRDRVTAELAEASAGRIAVEPVGTALVGPDLQPIHRQ
CCCEEEEEHHHHHCCHHHHHHHHHHCCCCEEEECCCCCEEECCCCCCCCCC
>Mature Secondary Structure
MCGGHSSNCTLSTLNARGERVSYRTVAGRGQAEIVIKKSRFIAHVAPVASEEAAWAFINE
CCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCHHEEECCCCCCCHHHHHHHHH
IRAAHSDATHNCFAFTAGAVQRMSDDGEPSGTAGRPIFEVLEKQGLSDTAIVVTRYFGGI
HHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
LLGAGGLVRAYSQAAAAGVEAAGVAEALPAVDLRVRVDYALLGRVQYLLQQHGALTLQTD
EECCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEEC
FGQEVVIVFRVLETDRDRVTAELAEASAGRIAVEPVGTALVGPDLQPIHRQ
CCCEEEEEHHHHHCCHHHHHHHHHHCCCCEEEECCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 3141378; 8313894 [H]