Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

Click here to switch to the map view.

The map label for this gene is 51893247

Identifier: 51893247

GI number: 51893247

Start: 2250542

End: 2252782

Strand: Reverse

Name: 51893247

Synonym: STH2109

Alternate gene names: NA

Gene position: 2252782-2250542 (Counterclockwise)

Preceding gene: 51893250

Following gene: 51893246

Centisome position: 63.17

GC content: 72.6

Gene sequence:

>2241_bases
TTGCTCCAGATAGCTTTCCCCGCGGCCGCGGCGGGCGTCAGCCTCACGGTCGACCCTGCGTTCCAGGGCCATTTCAAGGA
GGGTGAGTGGGTCACCCTGTGGGTGGAGGTGCGGGGCGACGAGGAGGCCGCCTCCGGCGAGGTGGTGGTGCAGACCGAGG
CGCCGCCCGTGTTCGGGCCTGTGTCCGGCACCCGGTATGCCGTGCCGTACAGCGTTTCCGCAGGCGAAGCGCAGCGGGTG
GCGGTCAGCCTGCCGAACGAGTACAGCTGGCCCGTGAGCGTGAGCCTGTACGCGGACGGCGAGCTGGTCGATGTGCAGAC
GCCCGACCTGAGCTGGGAGCCCCGGTACACCCTGATGGTCGGCGTGCTCGCCGCCGACGACGACATCCTGAACACGCTGT
CCGGGCTGCGGGGCGGCGATAACGTGCGCGTCGTCTCCCTGACGGCGGAGACCCTGCCCGACAGCCCGGGCCTTCTGAAC
AGCCTGGATCTGCTGGTGGTGGCCGGCTACGACACCGGCAGCCTGACGGCCCGGCAAGTACAGTCCCTGGAGGCCTGGGT
GGACCGCGGGGGAACCCTGCTGCTGTTCGGCGGCCCGGAGGGCGAGCGCACTCTGGGGCCGCTGCCCGCCAGCCTGAAGC
CCGTAAACGTCTCCGGGTCCGCGGAGGTCTCGCTGGCGCCGCTGGGCGACCTGTCCGGCGTGCCGCTGGAGGGCACGGCG
GTCGTGAGCGCCGGCCCGCTGGCCCGGGGAACCGTCCTGGCGCGGGCCGGGGAGCCGGGCGGCGGCGGGGAACCCCCCGT
GCTTGCCGCCGCGGCTCCGCTGGGCTCGGGACGGGTGGTGTACCTGGCCTACGATCCCGCGGGCGCACCCGTGGCCCGCT
GGGCCGGTCAGACCGCCCTGCTGGACCGGCTGGTGGGGCTGTCGGCCGGGCGGCCGCCCGCCTTCGACACCGACTGGCGG
GTGCAGTATGCGATTCAGCAGGTCCCTGACTGGGCGCTGCCCTCGGTCTGGACCGTGGTGCTGGTCCTGGGCGGCTATCT
GGTGGCCGTGGGCCCGGTCAACTACCTGGTCCTGCGCCGCCTGGATCGCCGGGAATGGGGCTGGGTCACCGTTCCGCTCC
TGTCGGTCATCTTCCTGGGAGCGGTCTACGGCATGGGCTCGGGCCGGTTCCAGGAGGGCATCACCCACGTGATGACCACC
ACCGAGCTGGTACCCGACAGCCGGACCGGGGTGATGACCGGGTACGTGGGGCTGTACGCGCCGGGGCGCTCCCGGCTCTC
CCTGCCGCTCCCCGGCGCCGGGCTCGTTCGGCCGCTGACCACCGGCACGTTCGTGGGCGGAGTGGAGAGCCGCATCGTGG
CCGGCGATCCGCTCACCCTCGAGCTGTCGGGGCTGACCAACTACAACATGACCGCCTTCGCGCTGGAGCAGCCGGTGACC
GTCCCGGGCGGCCTGGAGCTGGTGGACGTGGAGGTGACCGAGTTCCTGGTGACCGGCCGGATCCGGAACACCCTGCCCGT
TCCGGTGTCCGGGGTGGAGGTGGGCACCGCCTACGACGTGGTGTCGGTGGGGGACCTCGCCCCCGGCCAGACGTCCGAAC
CCTTCACGGCCGGGAGGAAGGCCAGGGTCGACTCCGGGCGGAAGGGGCCGATCCCGCTGCCCGGGACCGGCACTCCTGAC
CCCGACGCCGACCCGCGCCGGGAGCAGCTGCGGGCCTACGTCTGGGAGTCGGGGCAGGGCCGGCTGGGCTCGGGCGTGCT
GGTGATGGGCTGGACCGAGGAGCCCCTGGCACAACCGCCGGTGCCCGACCTGGGCCGCCGGGTCACCGGGGCAAACCTGG
TCTATGGCTTCCAGCCGCTGCCCGCTCCGGCCGACGGCGACCTGCCCGCGGGCGTCGTCCTGGGCCGGCCGGTGGATTCC
GAACGGGTGCAGCTGATCGGCCAGAACGTGTACTACGCACCCCCGGGGAGCCATCGGTTTGTCCTGTCGCTGCCCGTGCT
GGATCCCGGGCAGGTGGCTGAGGTGACGGTGGATCTGCAGGCGCCGGTGCGGGAGGCCGTGATGTCGGTGTACGTCCGCA
ACCAGCGCACCGGGGAGTGGGAGCTCCTTGCAGGACAGCGCGCAACGCTGGTCGACTGGCAGGACTACGTGCTTCCCGGC
GGGGTGATGGAGCTCCGGTACGACCTGTCCGTCGAGGCCGAGTTCCTGGCGCCCACGGTGGCCGTGAAGGGGGTGCGCTG
A

Upstream 100 bases:

>100_bases
CGACCCTCAGGGCACATTCGTCTGATGAATCAGCGAGTCCCGCACCATGCAACTAGGAGGAGAAGACGTGCGAAGGCTAT
GGCTGTGGGTGTTCCTGTTG

Downstream 100 bases:

>100_bases
TGCTCAGGGTAGAAGGACTGGCCAAGCGCTTCGGCGATGTGGAGGCGGTGAGGGACGTCAGTTTCACCGTGGAGCCCGGG
GCCATCTATGGCTTCGTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 746; Mature: 746

Protein sequence:

>746_residues
MLQIAFPAAAAGVSLTVDPAFQGHFKEGEWVTLWVEVRGDEEAASGEVVVQTEAPPVFGPVSGTRYAVPYSVSAGEAQRV
AVSLPNEYSWPVSVSLYADGELVDVQTPDLSWEPRYTLMVGVLAADDDILNTLSGLRGGDNVRVVSLTAETLPDSPGLLN
SLDLLVVAGYDTGSLTARQVQSLEAWVDRGGTLLLFGGPEGERTLGPLPASLKPVNVSGSAEVSLAPLGDLSGVPLEGTA
VVSAGPLARGTVLARAGEPGGGGEPPVLAAAAPLGSGRVVYLAYDPAGAPVARWAGQTALLDRLVGLSAGRPPAFDTDWR
VQYAIQQVPDWALPSVWTVVLVLGGYLVAVGPVNYLVLRRLDRREWGWVTVPLLSVIFLGAVYGMGSGRFQEGITHVMTT
TELVPDSRTGVMTGYVGLYAPGRSRLSLPLPGAGLVRPLTTGTFVGGVESRIVAGDPLTLELSGLTNYNMTAFALEQPVT
VPGGLELVDVEVTEFLVTGRIRNTLPVPVSGVEVGTAYDVVSVGDLAPGQTSEPFTAGRKARVDSGRKGPIPLPGTGTPD
PDADPRREQLRAYVWESGQGRLGSGVLVMGWTEEPLAQPPVPDLGRRVTGANLVYGFQPLPAPADGDLPAGVVLGRPVDS
ERVQLIGQNVYYAPPGSHRFVLSLPVLDPGQVAEVTVDLQAPVREAVMSVYVRNQRTGEWELLAGQRATLVDWQDYVLPG
GVMELRYDLSVEAEFLAPTVAVKGVR

Sequences:

>Translated_746_residues
MLQIAFPAAAAGVSLTVDPAFQGHFKEGEWVTLWVEVRGDEEAASGEVVVQTEAPPVFGPVSGTRYAVPYSVSAGEAQRV
AVSLPNEYSWPVSVSLYADGELVDVQTPDLSWEPRYTLMVGVLAADDDILNTLSGLRGGDNVRVVSLTAETLPDSPGLLN
SLDLLVVAGYDTGSLTARQVQSLEAWVDRGGTLLLFGGPEGERTLGPLPASLKPVNVSGSAEVSLAPLGDLSGVPLEGTA
VVSAGPLARGTVLARAGEPGGGGEPPVLAAAAPLGSGRVVYLAYDPAGAPVARWAGQTALLDRLVGLSAGRPPAFDTDWR
VQYAIQQVPDWALPSVWTVVLVLGGYLVAVGPVNYLVLRRLDRREWGWVTVPLLSVIFLGAVYGMGSGRFQEGITHVMTT
TELVPDSRTGVMTGYVGLYAPGRSRLSLPLPGAGLVRPLTTGTFVGGVESRIVAGDPLTLELSGLTNYNMTAFALEQPVT
VPGGLELVDVEVTEFLVTGRIRNTLPVPVSGVEVGTAYDVVSVGDLAPGQTSEPFTAGRKARVDSGRKGPIPLPGTGTPD
PDADPRREQLRAYVWESGQGRLGSGVLVMGWTEEPLAQPPVPDLGRRVTGANLVYGFQPLPAPADGDLPAGVVLGRPVDS
ERVQLIGQNVYYAPPGSHRFVLSLPVLDPGQVAEVTVDLQAPVREAVMSVYVRNQRTGEWELLAGQRATLVDWQDYVLPG
GVMELRYDLSVEAEFLAPTVAVKGVR
>Mature_746_residues
MLQIAFPAAAAGVSLTVDPAFQGHFKEGEWVTLWVEVRGDEEAASGEVVVQTEAPPVFGPVSGTRYAVPYSVSAGEAQRV
AVSLPNEYSWPVSVSLYADGELVDVQTPDLSWEPRYTLMVGVLAADDDILNTLSGLRGGDNVRVVSLTAETLPDSPGLLN
SLDLLVVAGYDTGSLTARQVQSLEAWVDRGGTLLLFGGPEGERTLGPLPASLKPVNVSGSAEVSLAPLGDLSGVPLEGTA
VVSAGPLARGTVLARAGEPGGGGEPPVLAAAAPLGSGRVVYLAYDPAGAPVARWAGQTALLDRLVGLSAGRPPAFDTDWR
VQYAIQQVPDWALPSVWTVVLVLGGYLVAVGPVNYLVLRRLDRREWGWVTVPLLSVIFLGAVYGMGSGRFQEGITHVMTT
TELVPDSRTGVMTGYVGLYAPGRSRLSLPLPGAGLVRPLTTGTFVGGVESRIVAGDPLTLELSGLTNYNMTAFALEQPVT
VPGGLELVDVEVTEFLVTGRIRNTLPVPVSGVEVGTAYDVVSVGDLAPGQTSEPFTAGRKARVDSGRKGPIPLPGTGTPD
PDADPRREQLRAYVWESGQGRLGSGVLVMGWTEEPLAQPPVPDLGRRVTGANLVYGFQPLPAPADGDLPAGVVLGRPVDS
ERVQLIGQNVYYAPPGSHRFVLSLPVLDPGQVAEVTVDLQAPVREAVMSVYVRNQRTGEWELLAGQRATLVDWQDYVLPG
GVMELRYDLSVEAEFLAPTVAVKGVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 78507; Mature: 78507

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQIAFPAAAAGVSLTVDPAFQGHFKEGEWVTLWVEVRGDEEAASGEVVVQTEAPPVFGP
CEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCEECC
VSGTRYAVPYSVSAGEAQRVAVSLPNEYSWPVSVSLYADGELVDVQTPDLSWEPRYTLMV
CCCCEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEEE
GVLAADDDILNTLSGLRGGDNVRVVSLTAETLPDSPGLLNSLDLLVVAGYDTGSLTARQV
EEEECCHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHH
QSLEAWVDRGGTLLLFGGPEGERTLGPLPASLKPVNVSGSAEVSLAPLGDLSGVPLEGTA
HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCEE
VVSAGPLARGTVLARAGEPGGGGEPPVLAAAAPLGSGRVVYLAYDPAGAPVARWAGQTAL
EEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHCCHHHH
LDRLVGLSAGRPPAFDTDWRVQYAIQQVPDWALPSVWTVVLVLGGYLVAVGPVNYLVLRR
HHHHHHCCCCCCCCCCCCCEEEEHHHHCCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHH
LDRREWGWVTVPLLSVIFLGAVYGMGSGRFQEGITHVMTTTELVPDSRTGVMTGYVGLYA
HCCCCCCEEEHHHHHHHHHHHHHCCCCCHHHHCHHEEEEEHEECCCCCCCEEEEEEEEEC
PGRSRLSLPLPGAGLVRPLTTGTFVGGVESRIVAGDPLTLELSGLTNYNMTAFALEQPVT
CCCCEEECCCCCCCCCCCCCCCEEECCCCCEEEECCCEEEEECCCCCCCEEEEEECCCCC
VPGGLELVDVEVTEFLVTGRIRNTLPVPVSGVEVGTAYDVVSVGDLAPGQTSEPFTAGRK
CCCCCEEEEEEEEEEEEECCCCCCCCCCCCCEEECCEEEEEEECCCCCCCCCCCCCCCCE
ARVDSGRKGPIPLPGTGTPDPDADPRREQLRAYVWESGQGRLGSGVLVMGWTEEPLAQPP
EECCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEECCCCCCCCCEEEEECCCCCCCCCC
VPDLGRRVTGANLVYGFQPLPAPADGDLPAGVVLGRPVDSERVQLIGQNVYYAPPGSHRF
CHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHEEECCEEECCCCCCEE
VLSLPVLDPGQVAEVTVDLQAPVREAVMSVYVRNQRTGEWELLAGQRATLVDWQDYVLPG
EEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCHHHCCCC
GVMELRYDLSVEAEFLAPTVAVKGVR
CEEEEEEECCEEEHHCCCEEEEECCC
>Mature Secondary Structure
MLQIAFPAAAAGVSLTVDPAFQGHFKEGEWVTLWVEVRGDEEAASGEVVVQTEAPPVFGP
CEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCEECC
VSGTRYAVPYSVSAGEAQRVAVSLPNEYSWPVSVSLYADGELVDVQTPDLSWEPRYTLMV
CCCCEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEEE
GVLAADDDILNTLSGLRGGDNVRVVSLTAETLPDSPGLLNSLDLLVVAGYDTGSLTARQV
EEEECCHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHH
QSLEAWVDRGGTLLLFGGPEGERTLGPLPASLKPVNVSGSAEVSLAPLGDLSGVPLEGTA
HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCEE
VVSAGPLARGTVLARAGEPGGGGEPPVLAAAAPLGSGRVVYLAYDPAGAPVARWAGQTAL
EEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHCCHHHH
LDRLVGLSAGRPPAFDTDWRVQYAIQQVPDWALPSVWTVVLVLGGYLVAVGPVNYLVLRR
HHHHHHCCCCCCCCCCCCCEEEEHHHHCCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHH
LDRREWGWVTVPLLSVIFLGAVYGMGSGRFQEGITHVMTTTELVPDSRTGVMTGYVGLYA
HCCCCCCEEEHHHHHHHHHHHHHCCCCCHHHHCHHEEEEEHEECCCCCCCEEEEEEEEEC
PGRSRLSLPLPGAGLVRPLTTGTFVGGVESRIVAGDPLTLELSGLTNYNMTAFALEQPVT
CCCCEEECCCCCCCCCCCCCCCEEECCCCCEEEECCCEEEEECCCCCCCEEEEEECCCCC
VPGGLELVDVEVTEFLVTGRIRNTLPVPVSGVEVGTAYDVVSVGDLAPGQTSEPFTAGRK
CCCCCEEEEEEEEEEEEECCCCCCCCCCCCCEEECCEEEEEEECCCCCCCCCCCCCCCCE
ARVDSGRKGPIPLPGTGTPDPDADPRREQLRAYVWESGQGRLGSGVLVMGWTEEPLAQPP
EECCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEECCCCCCCCCEEEEECCCCCCCCCC
VPDLGRRVTGANLVYGFQPLPAPADGDLPAGVVLGRPVDSERVQLIGQNVYYAPPGSHRF
CHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHEEECCEEECCCCCCEE
VLSLPVLDPGQVAEVTVDLQAPVREAVMSVYVRNQRTGEWELLAGQRATLVDWQDYVLPG
EEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCHHHCCCC
GVMELRYDLSVEAEFLAPTVAVKGVR
CEEEEEEECCEEEHHCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA