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The map label for this gene is yqgF [C]

Identifier: 51893132

GI number: 51893132

Start: 2135242

End: 2135676

Strand: Reverse

Name: yqgF [C]

Synonym: STH1994

Alternate gene names: 51893132

Gene position: 2135676-2135242 (Counterclockwise)

Preceding gene: 51893133

Following gene: 51893131

Centisome position: 59.89

GC content: 71.26

Gene sequence:

>435_bases
ATGCGCATCGGCGGGCTTGACGTCGGCGAGAAGACCATCGGCGTGGCGCTGTCCGACGAGCTGGGTCTTACGGCCCAGGC
GCTGGAGGTCATCCGCCGCCGGTCGCTGGAGCAGGATCTGGCCCGCCTGGACGAGATCGCCCGGCATTACGGCGTCGTGC
GCTGGGTGGTCGGCATGCCCCGGAACATGAACGGCACCTACGGGCCCCGGGCCGAGCTCACCCGAGCGTTCATGGAGCGC
CTGGCCGGCCACAGCGGCCTCCCGGTGGAGGCCTGGGACGAACGGCTGTCCACGATGGCGGCGGAGCGGGTGCTGCTGGA
GGCCGACGTCAGCCGGGCCCGGCGGCGGAAGGTCATCGACAAGATGGCCGCGGCGGTGATCCTGCAGGGGTATCTGGACG
CCCGGGCCGCCCGTCCGCCCGAAAGTTTCGTTTGA

Upstream 100 bases:

>100_bases
GCCTTCTGGGCGCACATCAACGGCTTCCTGAGCGGCGTGGCCCTGGCGCAGTTGCTCTCGCCGCGGCAGGAGAAGGCGGA
AGAACCGAGGTGAGCATGGA

Downstream 100 bases:

>100_bases
CAGGGTAACCGGGCTGCATTAGAATGAGGAATATCTTGGGGATCGGAGTGATTGCCATGAGCCACGATCACGAGCATGAG
CACGATGACGAGATCATCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MRIGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMPRNMNGTYGPRAELTRAFMER
LAGHSGLPVEAWDERLSTMAAERVLLEADVSRARRRKVIDKMAAAVILQGYLDARAARPPESFV

Sequences:

>Translated_144_residues
MRIGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMPRNMNGTYGPRAELTRAFMER
LAGHSGLPVEAWDERLSTMAAERVLLEADVSRARRRKVIDKMAAAVILQGYLDARAARPPESFV
>Mature_144_residues
MRIGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMPRNMNGTYGPRAELTRAFMER
LAGHSGLPVEAWDERLSTMAAERVLLEADVSRARRRKVIDKMAAAVILQGYLDARAARPPESFV

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=128, Percent_Identity=32.8125, Blast_Score=73, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_SYMTH (Q67MW4)

Other databases:

- EMBL:   AP006840
- RefSeq:   YP_075823.1
- ProteinModelPortal:   Q67MW4
- SMR:   Q67MW4
- GeneID:   2981840
- GenomeReviews:   AP006840_GR
- KEGG:   sth:STH1994
- NMPDR:   fig|292459.1.peg.1924
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- BioCyc:   STHE292459:STH1994-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15998; Mature: 15998

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMP
CCCCCCCCCCHHHCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RNMNGTYGPRAELTRAFMERLAGHSGLPVEAWDERLSTMAAERVLLEADVSRARRRKVID
CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMAAAVILQGYLDARAARPPESFV
HHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRIGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMP
CCCCCCCCCCHHHCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RNMNGTYGPRAELTRAFMERLAGHSGLPVEAWDERLSTMAAERVLLEADVSRARRRKVID
CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMAAAVILQGYLDARAARPPESFV
HHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA