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The map label for this gene is yqxC [H]

Identifier: 51892979

GI number: 51892979

Start: 1985782

End: 1986555

Strand: Reverse

Name: yqxC [H]

Synonym: STH1841

Alternate gene names: 51892979

Gene position: 1986555-1985782 (Counterclockwise)

Preceding gene: 51892980

Following gene: 51892978

Centisome position: 55.71

GC content: 72.35

Gene sequence:

>774_bases
ATGGCAGGAGAACGACTCGACGTGGCCCTGGTCAGCCGGGGCCACTTTCCTTCCCGGGAGCGGGCGCAGGAGGCCATCGC
GGCCGGGATGGTCCGGGTGAACGGCCGGGTGATCACCAAACCGGCCCGCAAGGTGGACCCCGGCGACGCCATCGAGGTCA
CCGGGGATCCCATCGGCTACGTGGGACGGGGCGGGCTGAAGCTGCAGGGCGCCCTGGACCAGTTCGGCATCGACCCGGCC
GGGCGCGTCTGCCTGGACGTGGGTGCCTCCACGGGGGGCTTCACCGACTGCCTGCTGCGGCGGGGGGCCCGGAGGGTCTA
CGCGGTGGACGTGGGGCGTGACCAGCTGCACCCCAGCCTGCGGCAGGATCCGCGGGTGGTGGTCATGGAGGAGACGGACA
TCCGGTCGGTGGCGGCCCTGCCCGAGCCGGTGGAGCTGGCGGCCGTCGACGTGTCCTTCATCTCGCTGACGTTGGTGCTG
CCGGCGGTGGCGCGGCTGCTCGCACCCGCCGGGCAGATCGTCGCCCTGATCAAGCCGCAGTTCGAGGTAGGGCCGGGCGG
CGTGGGCAAGGGCTGCATCGTGCGCGATCCGGCGCAGCACCGGCTGGCCGTGGACCGGGTGCTGCGGCGCGCCGCTGAGC
TGGGGCTGGCCTGCGTGCGGGTCATCGACTCACCGATCCTGGGCACGGAGGGGAACCGGGAGTTTTTGGCCTGGTTTGTG
CCGGGGGCGAATTTGGCCCATCGGGAAGGAGCGGCGGTGCCGGACCGGGAATGA

Upstream 100 bases:

>100_bases
GATGCGTTCCGACCTGGCGGCGCAGCCGGCCCGGCGCAGCCGCAGCGTGCGGCGGCTGAGCGGGGCGAAGGCGGCCGGCA
ACGGGGAGACCTGAGGAGCT

Downstream 100 bases:

>100_bases
TGAGGGGGAGGAGGTGCGTTCGTGGAGGCTCCAGAGGTCAAGATAGAGGTCGAGTGCGCACACTGCGGCAACCGGAAGCT
CGTCCAGCTCCCCGGGCAGT

Product: putative rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MAGERLDVALVSRGHFPSRERAQEAIAAGMVRVNGRVITKPARKVDPGDAIEVTGDPIGYVGRGGLKLQGALDQFGIDPA
GRVCLDVGASTGGFTDCLLRRGARRVYAVDVGRDQLHPSLRQDPRVVVMEETDIRSVAALPEPVELAAVDVSFISLTLVL
PAVARLLAPAGQIVALIKPQFEVGPGGVGKGCIVRDPAQHRLAVDRVLRRAAELGLACVRVIDSPILGTEGNREFLAWFV
PGANLAHREGAAVPDRE

Sequences:

>Translated_257_residues
MAGERLDVALVSRGHFPSRERAQEAIAAGMVRVNGRVITKPARKVDPGDAIEVTGDPIGYVGRGGLKLQGALDQFGIDPA
GRVCLDVGASTGGFTDCLLRRGARRVYAVDVGRDQLHPSLRQDPRVVVMEETDIRSVAALPEPVELAAVDVSFISLTLVL
PAVARLLAPAGQIVALIKPQFEVGPGGVGKGCIVRDPAQHRLAVDRVLRRAAELGLACVRVIDSPILGTEGNREFLAWFV
PGANLAHREGAAVPDRE
>Mature_256_residues
AGERLDVALVSRGHFPSRERAQEAIAAGMVRVNGRVITKPARKVDPGDAIEVTGDPIGYVGRGGLKLQGALDQFGIDPAG
RVCLDVGASTGGFTDCLLRRGARRVYAVDVGRDQLHPSLRQDPRVVVMEETDIRSVAALPEPVELAAVDVSFISLTLVLP
AVARLLAPAGQIVALIKPQFEVGPGGVGKGCIVRDPAQHRLAVDRVLRRAAELGLACVRVIDSPILGTEGNREFLAWFVP
GANLAHREGAAVPDRE

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27249; Mature: 27118

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGERLDVALVSRGHFPSRERAQEAIAAGMVRVNGRVITKPARKVDPGDAIEVTGDPIGY
CCCCEEEEEEEECCCCCCHHHHHHHHHHCEEEECCEEEECCCCCCCCCCEEEECCCCCCC
VGRGGLKLQGALDQFGIDPAGRVCLDVGASTGGFTDCLLRRGARRVYAVDVGRDQLHPSL
CCCCCEEEECCHHHHCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHHCCCHH
RQDPRVVVMEETDIRSVAALPEPVELAAVDVSFISLTLVLPAVARLLAPAGQIVALIKPQ
CCCCCEEEEECCCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
FEVGPGGVGKGCIVRDPAQHRLAVDRVLRRAAELGLACVRVIDSPILGTEGNREFLAWFV
EECCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
PGANLAHREGAAVPDRE
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGERLDVALVSRGHFPSRERAQEAIAAGMVRVNGRVITKPARKVDPGDAIEVTGDPIGY
CCCEEEEEEEECCCCCCHHHHHHHHHHCEEEECCEEEECCCCCCCCCCEEEECCCCCCC
VGRGGLKLQGALDQFGIDPAGRVCLDVGASTGGFTDCLLRRGARRVYAVDVGRDQLHPSL
CCCCCEEEECCHHHHCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHHCCCHH
RQDPRVVVMEETDIRSVAALPEPVELAAVDVSFISLTLVLPAVARLLAPAGQIVALIKPQ
CCCCCEEEEECCCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
FEVGPGGVGKGCIVRDPAQHRLAVDRVLRRAAELGLACVRVIDSPILGTEGNREFLAWFV
EECCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
PGANLAHREGAAVPDRE
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]