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The map label for this gene is deoB

Identifier: 51892958

GI number: 51892958

Start: 1964577

End: 1965758

Strand: Reverse

Name: deoB

Synonym: STH1820

Alternate gene names: 51892958

Gene position: 1965758-1964577 (Counterclockwise)

Preceding gene: 51892959

Following gene: 51892956

Centisome position: 55.12

GC content: 69.54

Gene sequence:

>1182_bases
ATGGCAGCAGTCCGACGAGTCGTCTTGATCGTCATCGACAGCGTGGGAATCGGCGCCATGCCGGACGCCGCCGACTGGGG
CGACGCCGGGGCGAACACCCTGGGCAACATGGCCCGCCAGCGGGGCGGCCTGCCCCTGCCCAACCTGGGGCGGCTGGGTC
TGGGCAACCTGTGCGCGATCGAGGGCACGCCGCCGGTGGACGCGCCGGCCGGCGCTTACGGGCGCATGGCGATCTTCTCC
CACGGCAAGGACACCATGACCGGTCACTGGGAGATGGTGGGCATCCGGCCGGAGGCCCCGTTCCGGACGTATCCCGACGG
TTTCCCCGAGGACCTGATCGCCGAGTTCTGCCGCCGCGCCGGGCTGGAGGGCGTGCTGGGCAACAAGGTGGCCTCGGGCA
CGGAGATCATCAAGGAGCTGGGCGAGGAGCACCTGCGCACCGGCTGGCCCATCGTCTACACCAGCGCCGACTCGGTCTTC
CAGGTCGCGGCGCACGAGGAGCGGTTCGGCCTGGAGCGGCTCTATGAGGTCTGCCGGATCGCCCGGGACCTGCTGCGGCC
GCCGCACCGGGTCGGCCGGGTCATCGCCCGGCCCTTTGTGGGCACCGACCGGACCAACTTCACCCGCACGGCCAACCGGC
ACGACTACGCGCTGGAGCCGCCGCGGATGCTCCTGGACGAGGTGAAGGACGCGGGCCTTTCGGTGCTGGCGGTGGGCAAG
ATCAGCGACATCTTCTCGGGCCACGGCATCACCTACAGCGTGCACACCAAGTCCAACGCCGACGGCATCGAGAAGATCCA
CGAATGCCTGGACCGGCAGGAGCCCGGGCTCATCTTCGCCAATCTGGTCGACTTCGACATGCTCTACGGGCACCGGCGGG
ACGTGGAGGGGTACGCACGGGCCATGCTCGAGTTCGACGCGGCGCTGCCGGCCATCATGGCCAAGCTGGGACCGGAGGAC
GTGCTGGTGGTCACCGCCGACCACGGCAACGACCCGACCTACATCGGCACCGACCACACCCGGGAGTACGTGCCGGTGCT
GCTTTACGGGGAGCCCATCAAGCCCGGCGTCGATGTGGGCACCCGGGCGTCGCTCGCGGACCTGGGCGCCACGGTTGCGG
ATCTGCTGGGGGTCCCGCAGACCGGCTTCGGCGAGAGTTTTGCGGACCAGATCAGAAAGTAG

Upstream 100 bases:

>100_bases
CGCGCACACGTCCGCGGGCCTGCCGAGCGCAGGCCCGCTTTTCCCTGCCCTGTTCCAGTGCTATAGTGAGAGACGAAGTC
CAGACAAAGGAGTAAGAGAC

Downstream 100 bases:

>100_bases
GGCCCTGGGAAGCGCCCCCGAGCGGGGCGCTTCCTCGCGCCTGGGAGCGCTGTCCTCGCGCCGGCCTGAACGGGAAGGGG
GAATGAAACGGGAGAAATCG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MAAVRRVVLIVIDSVGIGAMPDAADWGDAGANTLGNMARQRGGLPLPNLGRLGLGNLCAIEGTPPVDAPAGAYGRMAIFS
HGKDTMTGHWEMVGIRPEAPFRTYPDGFPEDLIAEFCRRAGLEGVLGNKVASGTEIIKELGEEHLRTGWPIVYTSADSVF
QVAAHEERFGLERLYEVCRIARDLLRPPHRVGRVIARPFVGTDRTNFTRTANRHDYALEPPRMLLDEVKDAGLSVLAVGK
ISDIFSGHGITYSVHTKSNADGIEKIHECLDRQEPGLIFANLVDFDMLYGHRRDVEGYARAMLEFDAALPAIMAKLGPED
VLVVTADHGNDPTYIGTDHTREYVPVLLYGEPIKPGVDVGTRASLADLGATVADLLGVPQTGFGESFADQIRK

Sequences:

>Translated_393_residues
MAAVRRVVLIVIDSVGIGAMPDAADWGDAGANTLGNMARQRGGLPLPNLGRLGLGNLCAIEGTPPVDAPAGAYGRMAIFS
HGKDTMTGHWEMVGIRPEAPFRTYPDGFPEDLIAEFCRRAGLEGVLGNKVASGTEIIKELGEEHLRTGWPIVYTSADSVF
QVAAHEERFGLERLYEVCRIARDLLRPPHRVGRVIARPFVGTDRTNFTRTANRHDYALEPPRMLLDEVKDAGLSVLAVGK
ISDIFSGHGITYSVHTKSNADGIEKIHECLDRQEPGLIFANLVDFDMLYGHRRDVEGYARAMLEFDAALPAIMAKLGPED
VLVVTADHGNDPTYIGTDHTREYVPVLLYGEPIKPGVDVGTRASLADLGATVADLLGVPQTGFGESFADQIRK
>Mature_392_residues
AAVRRVVLIVIDSVGIGAMPDAADWGDAGANTLGNMARQRGGLPLPNLGRLGLGNLCAIEGTPPVDAPAGAYGRMAIFSH
GKDTMTGHWEMVGIRPEAPFRTYPDGFPEDLIAEFCRRAGLEGVLGNKVASGTEIIKELGEEHLRTGWPIVYTSADSVFQ
VAAHEERFGLERLYEVCRIARDLLRPPHRVGRVIARPFVGTDRTNFTRTANRHDYALEPPRMLLDEVKDAGLSVLAVGKI
SDIFSGHGITYSVHTKSNADGIEKIHECLDRQEPGLIFANLVDFDMLYGHRRDVEGYARAMLEFDAALPAIMAKLGPEDV
LVVTADHGNDPTYIGTDHTREYVPVLLYGEPIKPGVDVGTRASLADLGATVADLLGVPQTGFGESFADQIRK

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=409, Percent_Identity=45.721271393643, Blast_Score=326, Evalue=2e-90,
Organism=Escherichia coli, GI1789781, Length=423, Percent_Identity=28.8416075650118, Blast_Score=135, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_SYMTH (Q67ND8)

Other databases:

- EMBL:   AP006840
- RefSeq:   YP_075649.1
- ProteinModelPortal:   Q67ND8
- SMR:   Q67ND8
- GeneID:   2981989
- GenomeReviews:   AP006840_GR
- KEGG:   sth:STH1820
- NMPDR:   fig|292459.1.peg.1756
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- ProtClustDB:   PRK05362
- BioCyc:   STHE292459:STH1820-MONOMER
- BRENDA:   5.4.2.7
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 42606; Mature: 42475

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAVRRVVLIVIDSVGIGAMPDAADWGDAGANTLGNMARQRGGLPLPNLGRLGLGNLCAI
CHHHHEEEHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
EGTPPVDAPAGAYGRMAIFSHGKDTMTGHWEMVGIRPEAPFRTYPDGFPEDLIAEFCRRA
CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHC
GLEGVLGNKVASGTEIIKELGEEHLRTGWPIVYTSADSVFQVAAHEERFGLERLYEVCRI
CCCCHHCCHHCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHHHH
ARDLLRPPHRVGRVIARPFVGTDRTNFTRTANRHDYALEPPRMLLDEVKDAGLSVLAVGK
HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECC
ISDIFSGHGITYSVHTKSNADGIEKIHECLDRQEPGLIFANLVDFDMLYGHRRDVEGYAR
HHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCHHHHHH
AMLEFDAALPAIMAKLGPEDVLVVTADHGNDPTYIGTDHTREYVPVLLYGEPIKPGVDVG
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCC
TRASLADLGATVADLLGVPQTGFGESFADQIRK
CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
>Mature Secondary Structure 
AAVRRVVLIVIDSVGIGAMPDAADWGDAGANTLGNMARQRGGLPLPNLGRLGLGNLCAI
HHHHEEEHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
EGTPPVDAPAGAYGRMAIFSHGKDTMTGHWEMVGIRPEAPFRTYPDGFPEDLIAEFCRRA
CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHC
GLEGVLGNKVASGTEIIKELGEEHLRTGWPIVYTSADSVFQVAAHEERFGLERLYEVCRI
CCCCHHCCHHCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHHHH
ARDLLRPPHRVGRVIARPFVGTDRTNFTRTANRHDYALEPPRMLLDEVKDAGLSVLAVGK
HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECC
ISDIFSGHGITYSVHTKSNADGIEKIHECLDRQEPGLIFANLVDFDMLYGHRRDVEGYAR
HHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCHHHHHH
AMLEFDAALPAIMAKLGPEDVLVVTADHGNDPTYIGTDHTREYVPVLLYGEPIKPGVDVG
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCC
TRASLADLGATVADLLGVPQTGFGESFADQIRK
CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA