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The map label for this gene is scpB

Identifier: 51892940

GI number: 51892940

Start: 1944552

End: 1945211

Strand: Reverse

Name: scpB

Synonym: STH1802

Alternate gene names: 51892940

Gene position: 1945211-1944552 (Counterclockwise)

Preceding gene: 51892941

Following gene: 51892939

Centisome position: 54.55

GC content: 71.06

Gene sequence:

>660_bases
ATGATCTGGAACCATGGCAAGATGATCCTGGAGGCTTTGCTCCTGGCGTCGCCGGAGCCGCTCACGATCAAGCGCATCGC
CGAGGTGATCGGCCTCGACGAGCGGGACGCCGCCCTGCTCATGGCGGACCTGCAGAAGGACTACGAGGCCCCGCACCGGG
GGCTGGCGATCCGGGAGATGGCGGGGGGCTACGTGCTGACCACCCGCCCCGAAGCCGCCGAGTACGTGGAGCGGCTGCTG
CAGCCCAAATCGCGGGGACTCTCCCACGCCGCCCTGGAGACGCTGGCCATCATCGCGTACCGGCAGCCCATCACCAAGGC
CGAGATCGAGAACGTGCGCGGGGTGAAAGTGGACCGGGCCCTGGAGACGCTGCTGGAGCGGGGGCTGATCGAGGACAAGG
GGCGCAAGGAGGCGCCGGGCCGGCCGATCCTCTACGGCACCACCGCCGAGTTCCTCCGGTACTTCGGGCTGCGGGAGCTG
AGCGAGCTGCCGCCGGTGGAGATCGACACGTCGGAGCCCGGCCTGATCGTGCCCACCCGCACGGGGGGCGGCGAGGCGGA
GCGGGAGGTGCAGGCCTCGCTGTTTGCGGGCGGGGAGGAACCGTCCGCCGAAGCGGCGGACGGCGGCGCAGGGGAGTCGA
CGCACGGGGAGGAGGAGTAG

Upstream 100 bases:

>100_bases
GGCGCCAGGTGAGGGTGGTGCAGCAGGCGCTCTTCGGGGAGATCCTGGTGCTGCAGGCGGAACCGCCGCAGGATGAGGCC
GAGGGAGGCCGGGAGGACGG

Downstream 100 bases:

>100_bases
CGGTTGGGGTTCACGGGGCACGCCTTCGTCGACTGGGATGACACGATCGCCGAGAACATCCGCTACTTCCGGGAGGTCGA
GGCGCAGATCAGCCTGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MIWNHGKMILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREMAGGYVLTTRPEAAEYVERLL
QPKSRGLSHAALETLAIIAYRQPITKAEIENVRGVKVDRALETLLERGLIEDKGRKEAPGRPILYGTTAEFLRYFGLREL
SELPPVEIDTSEPGLIVPTRTGGGEAEREVQASLFAGGEEPSAEAADGGAGESTHGEEE

Sequences:

>Translated_219_residues
MIWNHGKMILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREMAGGYVLTTRPEAAEYVERLL
QPKSRGLSHAALETLAIIAYRQPITKAEIENVRGVKVDRALETLLERGLIEDKGRKEAPGRPILYGTTAEFLRYFGLREL
SELPPVEIDTSEPGLIVPTRTGGGEAEREVQASLFAGGEEPSAEAADGGAGESTHGEEE
>Mature_219_residues
MIWNHGKMILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREMAGGYVLTTRPEAAEYVERLL
QPKSRGLSHAALETLAIIAYRQPITKAEIENVRGVKVDRALETLLERGLIEDKGRKEAPGRPILYGTTAEFLRYFGLREL
SELPPVEIDTSEPGLIVPTRTGGGEAEREVQASLFAGGEEPSAEAADGGAGESTHGEEE

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_SYMTH (Q67NF6)

Other databases:

- EMBL:   AP006840
- RefSeq:   YP_075631.1
- ProteinModelPortal:   Q67NF6
- SMR:   Q67NF6
- GeneID:   2982328
- GenomeReviews:   AP006840_GR
- KEGG:   sth:STH1802
- NMPDR:   fig|292459.1.peg.1739
- HOGENOM:   HBG752450
- OMA:   REWIRIA
- BioCyc:   STHE292459:STH1802-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 23850; Mature: 23850

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWNHGKMILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREM
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEHHHH
AGGYVLTTRPEAAEYVERLLQPKSRGLSHAALETLAIIAYRQPITKAEIENVRGVKVDRA
CCCEEEEECCHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHH
LETLLERGLIEDKGRKEAPGRPILYGTTAEFLRYFGLRELSELPPVEIDTSEPGLIVPTR
HHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCEECCCCCCEEEECC
TGGGEAEREVQASLFAGGEEPSAEAADGGAGESTHGEEE
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIWNHGKMILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREM
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEHHHH
AGGYVLTTRPEAAEYVERLLQPKSRGLSHAALETLAIIAYRQPITKAEIENVRGVKVDRA
CCCEEEEECCHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHH
LETLLERGLIEDKGRKEAPGRPILYGTTAEFLRYFGLRELSELPPVEIDTSEPGLIVPTR
HHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCEECCCCCCEEEECC
TGGGEAEREVQASLFAGGEEPSAEAADGGAGESTHGEEE
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA