Click here to switch to the map view.

The map label for this gene is ykoU [H]

Identifier: 51892933

GI number: 51892933

Start: 1938517

End: 1939440

Strand: Reverse

Name: ykoU [H]

Synonym: STH1795

Alternate gene names: 51892933

Gene position: 1939440-1938517 (Counterclockwise)

Preceding gene: 51892934

Following gene: 51892932

Centisome position: 54.38

GC content: 71.21

Gene sequence:

>924_bases
GTGGCCAGAACCGAGAGGCGGTGGGTACGGGTCGGCGGGCGGGAGCTGGCGGTGACCAACCTGGAGAAGCCCATGTGGCC
GGCCGACGGGCTGACCAAGGGGGACCTGATCTCCCACTACGTGTCCGTGGCTCCCTACCTGCTGCCGTACCTGCGGGGGC
GGCCGGTGGTGCTCACCCGTTACCCCCACGGAGTCGGGGGCAAGTGGTTTTACCAGAAGGACGCCCCGCAGGGGCTCCCG
GACTGGATTCCGACCTGGGCGGACCGGGCGGAGGACGGCCGCGTCATCCGCTACCTGCGCATCGAGGAGCCGGCGGCGCT
GGCGTACGTGGCCAATCTGGGAGCCATCGAACTTCACCCGTGGCTCTCGTCCTGCGACTCGCCGGACCACCCGGACTGGG
CGGTCATCGACCTCGACCCGGCGGAAGGCGCCACCTTCGCAGACGTGCTGGTCGTCGCCCGGCTGGTCCGGCAGATCCTG
GGCGAGGTGCAGGTGCAGGGTTTCCCCAAGCTGTCGGGGGCCACCGGCGTCCACATCTTCTGTCCCGCGGCGCCGGGCAC
GACCTACGCCGAGACGGCCGCGTTCTGCGAGCAGGTGGGCCGGATCCTGCTGCGAGCGTATCCGGAGAAGGTGACGCTCG
AGCGCGCGGTCGCACGGCGCGGACCGAAGGTGTACGTGGATTACCTGCAGAACCGGCGCGGGCAGACGATCACCAGTGTG
TACGGACTGCGGCCGCTGCCCGGGGCGCCGGTGTCCGCGCCGGTCACGTGGGAGGAGCTGGAGGGCGAGCCGCCGCGGAT
CACGATGCGCACCCTGCCCGCGCGCCTGGCCGCGGTGGGCGACCTGTTCGCGCCGATGCTGCAGGCCACCCAGGACCTGC
AGGCGGCCACGGAGCGGCTCAGGAGGTATCTCACAGGTGTGTGA

Upstream 100 bases:

>100_bases
GGCTGCTGCCCACAGGCGCGGGGGAGGCGCGGGGGTATCCGGCCGGGCGCCGGGGAGATGGGGACGGCGGTCGGATCCCC
GTGGAGGGCGGGCCGGCATA

Downstream 100 bases:

>100_bases
ACACACCGGACTCCGATCCTCCGGCAGGGTAACGGCTAGGCCCATCCGGAGTGCCCCGGCCACCCTGTCGTGCCGGCTGG
GTGGAGGTAGACAACGCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MARTERRWVRVGGRELAVTNLEKPMWPADGLTKGDLISHYVSVAPYLLPYLRGRPVVLTRYPHGVGGKWFYQKDAPQGLP
DWIPTWADRAEDGRVIRYLRIEEPAALAYVANLGAIELHPWLSSCDSPDHPDWAVIDLDPAEGATFADVLVVARLVRQIL
GEVQVQGFPKLSGATGVHIFCPAAPGTTYAETAAFCEQVGRILLRAYPEKVTLERAVARRGPKVYVDYLQNRRGQTITSV
YGLRPLPGAPVSAPVTWEELEGEPPRITMRTLPARLAAVGDLFAPMLQATQDLQAATERLRRYLTGV

Sequences:

>Translated_307_residues
MARTERRWVRVGGRELAVTNLEKPMWPADGLTKGDLISHYVSVAPYLLPYLRGRPVVLTRYPHGVGGKWFYQKDAPQGLP
DWIPTWADRAEDGRVIRYLRIEEPAALAYVANLGAIELHPWLSSCDSPDHPDWAVIDLDPAEGATFADVLVVARLVRQIL
GEVQVQGFPKLSGATGVHIFCPAAPGTTYAETAAFCEQVGRILLRAYPEKVTLERAVARRGPKVYVDYLQNRRGQTITSV
YGLRPLPGAPVSAPVTWEELEGEPPRITMRTLPARLAAVGDLFAPMLQATQDLQAATERLRRYLTGV
>Mature_306_residues
ARTERRWVRVGGRELAVTNLEKPMWPADGLTKGDLISHYVSVAPYLLPYLRGRPVVLTRYPHGVGGKWFYQKDAPQGLPD
WIPTWADRAEDGRVIRYLRIEEPAALAYVANLGAIELHPWLSSCDSPDHPDWAVIDLDPAEGATFADVLVVARLVRQILG
EVQVQGFPKLSGATGVHIFCPAAPGTTYAETAAFCEQVGRILLRAYPEKVTLERAVARRGPKVYVDYLQNRRGQTITSVY
GLRPLPGAPVSAPVTWEELEGEPPRITMRTLPARLAAVGDLFAPMLQATQDLQAATERLRRYLTGV

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 34014; Mature: 33882

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTERRWVRVGGRELAVTNLEKPMWPADGLTKGDLISHYVSVAPYLLPYLRGRPVVLTR
CCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
YPHGVGGKWFYQKDAPQGLPDWIPTWADRAEDGRVIRYLRIEEPAALAYVANLGAIELHP
CCCCCCCCEEECCCCCCCCCHHCCHHHCCCCCCCEEEEEEECCCHHHHHHHHCCCEEECH
WLSSCDSPDHPDWAVIDLDPAEGATFADVLVVARLVRQILGEVQVQGFPKLSGATGVHIF
HHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
CPAAPGTTYAETAAFCEQVGRILLRAYPEKVTLERAVARRGPKVYVDYLQNRRGQTITSV
ECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEHHHHHCCCCCEEHHH
YGLRPLPGAPVSAPVTWEELEGEPPRITMRTLPARLAAVGDLFAPMLQATQDLQAATERL
HCCCCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRYLTGV
HHHHCCC
>Mature Secondary Structure 
ARTERRWVRVGGRELAVTNLEKPMWPADGLTKGDLISHYVSVAPYLLPYLRGRPVVLTR
CCCCCHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
YPHGVGGKWFYQKDAPQGLPDWIPTWADRAEDGRVIRYLRIEEPAALAYVANLGAIELHP
CCCCCCCCEEECCCCCCCCCHHCCHHHCCCCCCCEEEEEEECCCHHHHHHHHCCCEEECH
WLSSCDSPDHPDWAVIDLDPAEGATFADVLVVARLVRQILGEVQVQGFPKLSGATGVHIF
HHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
CPAAPGTTYAETAAFCEQVGRILLRAYPEKVTLERAVARRGPKVYVDYLQNRRGQTITSV
ECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEHHHHHCCCCCEEHHH
YGLRPLPGAPVSAPVTWEELEGEPPRITMRTLPARLAAVGDLFAPMLQATQDLQAATERL
HCCCCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRYLTGV
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]