Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is 51892896

Identifier: 51892896

GI number: 51892896

Start: 1904582

End: 1904998

Strand: Reverse

Name: 51892896

Synonym: STH1758

Alternate gene names: NA

Gene position: 1904998-1904582 (Counterclockwise)

Preceding gene: 51892897

Following gene: 51892895

Centisome position: 53.42

GC content: 71.46

Gene sequence:

>417_bases
ATGGGGGGAGATGACGTGGCGGTTGCGACCCGTCGCGATGTGTGGTTGCTGGCCCGGGAGCTGGCCGAGGCCATCGCGGA
GACGCCGGAGGTGCAGGAGTACCGGCGGACCGAGGACGCGGTGCTGGCCGACCCCGACGCGGTCGCCCTGATCCGGGAGT
ACGAGGCGGCCAAGCGGGCGGTAAAGCTCTCCCGCGGCCGGCCGCCCGAGGAGCAGAAGGCCCTGGTGGAGCGATTCCTG
GCGATCGAGGAGCGGTTCAACGCCCACCCGGTGATCCAGGCCTACTGGAACGCCCGGGTGGCCCTCGATGCCTTCATGGA
GCGGATCAACGCCGTGGTGACCTTCCCGATCACCGGCGAGACGGCGCCCCGGGCAAAGGGCGGCTGCGGCTCCGGCAGCT
GCGGCTGCGGCGGATAA

Upstream 100 bases:

>100_bases
TCAGGGGCCGGATCGTGCCCGTGCGCATCACCCGCGCCGGCACCTGGACCCTGGAGGGCGAGCTGGTGGAGAGCCCGGTG
ACGCTGGCCTAGTCAGCACG

Downstream 100 bases:

>100_bases
GGGCAGGACGGATCCGGAGGGGGGCAGTTGCCCCCCTCCGGGCTTGCGAGCAGGGTTCCGGCCTGCGGGTGACGAACAAC
AGCCGGAAGGACCGCGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MGGDDVAVATRRDVWLLARELAEAIAETPEVQEYRRTEDAVLADPDAVALIREYEAAKRAVKLSRGRPPEEQKALVERFL
AIEERFNAHPVIQAYWNARVALDAFMERINAVVTFPITGETAPRAKGGCGSGSCGCGG

Sequences:

>Translated_138_residues
MGGDDVAVATRRDVWLLARELAEAIAETPEVQEYRRTEDAVLADPDAVALIREYEAAKRAVKLSRGRPPEEQKALVERFL
AIEERFNAHPVIQAYWNARVALDAFMERINAVVTFPITGETAPRAKGGCGSGSCGCGG
>Mature_137_residues
GGDDVAVATRRDVWLLARELAEAIAETPEVQEYRRTEDAVLADPDAVALIREYEAAKRAVKLSRGRPPEEQKALVERFLA
IEERFNAHPVIQAYWNARVALDAFMERINAVVTFPITGETAPRAKGGCGSGSCGCGG

Specific function: Unknown

COG id: COG4550

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15043; Mature: 14912

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGDDVAVATRRDVWLLARELAEAIAETPEVQEYRRTEDAVLADPDAVALIREYEAAKRA
CCCCCCEEECHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEECCCHHHHHHHHHHHHHHH
VKLSRGRPPEEQKALVERFLAIEERFNAHPVIQAYWNARVALDAFMERINAVVTFPITGE
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCC
TAPRAKGGCGSGSCGCGG
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GGDDVAVATRRDVWLLARELAEAIAETPEVQEYRRTEDAVLADPDAVALIREYEAAKRA
CCCCCEEECHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEECCCHHHHHHHHHHHHHHH
VKLSRGRPPEEQKALVERFLAIEERFNAHPVIQAYWNARVALDAFMERINAVVTFPITGE
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCC
TAPRAKGGCGSGSCGCGG
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA