Click here to switch to the map view.

The map label for this gene is pdaB [H]

Identifier: 51892759

GI number: 51892759

Start: 1760189

End: 1760929

Strand: Reverse

Name: pdaB [H]

Synonym: STH1621

Alternate gene names: 51892759

Gene position: 1760929-1760189 (Counterclockwise)

Preceding gene: 51892760

Following gene: 51892749

Centisome position: 49.38

GC content: 69.37

Gene sequence:

>741_bases
ATGCTCTTCATCGACCGCGCATGGCTGGTGCGCCGGGCCGTCGTGGTGGCCACGCTCTGCCTGGCGCTGTTCACGATCTC
GTTTCTGCGGAGCCCCGCATTCCAACCGACTGCGGCAACGGCCTGGCAGGCCGACCGGCCGCTCACACGGGCCGACTCGC
CCGACGACCGGGTGGCCCTGACCTTCGACGTCACGTGGCAGAAACAGGAGCTCGCCAAGATCCTGGACATCCTGGACCAG
GCCGGGGTGAAGGCCACCTTCTTCGTGGGCGGCACGTTCCTGCAGCTGTATCCGGACATGGTCAAGGAAATCGCCCGCCG
CGGCCACGAGGTCGGCACGCTGGGCCAGCAGATCCGTGACCTCTCGGGGATGCCGGAAAACGAAATCGTCTCCAACCTGC
TGGGCAGCCAGTCCGCCCTGGCCAAGATCCTGGGCGGCCCCGTACGGTACTTCCGCCCGCCGAGCGGCAAGGCCCCGCCG
GAGGTGCTGCGCGCTGCCCACCAGGCCAGGCTGGTCACGGTCACTTACGCCCTGGATGGCCAGGACCACCTCGGGCTGAC
GGCCGACCAGATCGTCCGGCGGGTGGTGCGGAAGGCCCAGCGGGGCGACATCATCCGGCTGACGGCCTCCGACTTCGTCA
CCGAGACGGCGGAGGCGCTGCCGCGCATCCTCGAGGGGCTGCAGCGGCGGGGCTTCAAGCTGGTCCGGATTTCCGACCTG
GTGCCTGCGGACGACGGGTAG

Upstream 100 bases:

>100_bases
GGAGGTGCAACACCGGCTCCGGCGGCTTCGCCGCAAGCGCACGGGCCAGTCTTCATAACGCAGGGCCCCCCGGACATACT
CTTGTCCGGGGGGTTGTACC

Downstream 100 bases:

>100_bases
GCCCTGCGCCTAATCCCTTCCGTCACCTGGCGGCAGCAGGTCCTCCTCGACGTCGATGGTTCGGCCTTCCACGTCGATGA
AGTCGTCGGCCCTTCGTGCA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MLFIDRAWLVRRAVVVATLCLALFTISFLRSPAFQPTAATAWQADRPLTRADSPDDRVALTFDVTWQKQELAKILDILDQ
AGVKATFFVGGTFLQLYPDMVKEIARRGHEVGTLGQQIRDLSGMPENEIVSNLLGSQSALAKILGGPVRYFRPPSGKAPP
EVLRAAHQARLVTVTYALDGQDHLGLTADQIVRRVVRKAQRGDIIRLTASDFVTETAEALPRILEGLQRRGFKLVRISDL
VPADDG

Sequences:

>Translated_246_residues
MLFIDRAWLVRRAVVVATLCLALFTISFLRSPAFQPTAATAWQADRPLTRADSPDDRVALTFDVTWQKQELAKILDILDQ
AGVKATFFVGGTFLQLYPDMVKEIARRGHEVGTLGQQIRDLSGMPENEIVSNLLGSQSALAKILGGPVRYFRPPSGKAPP
EVLRAAHQARLVTVTYALDGQDHLGLTADQIVRRVVRKAQRGDIIRLTASDFVTETAEALPRILEGLQRRGFKLVRISDL
VPADDG
>Mature_246_residues
MLFIDRAWLVRRAVVVATLCLALFTISFLRSPAFQPTAATAWQADRPLTRADSPDDRVALTFDVTWQKQELAKILDILDQ
AGVKATFFVGGTFLQLYPDMVKEIARRGHEVGTLGQQIRDLSGMPENEIVSNLLGSQSALAKILGGPVRYFRPPSGKAPP
EVLRAAHQARLVTVTYALDGQDHLGLTADQIVRRVVRKAQRGDIIRLTASDFVTETAEALPRILEGLQRRGFKLVRISDL
VPADDG

Specific function: Necessary to maintain spores after the late stage of sporulation. Might be involved in cortex formation [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Forespore. Note=Produced in the mother cell compartment and transported into the forespore [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014132 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 27126; Mature: 27126

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFIDRAWLVRRAVVVATLCLALFTISFLRSPAFQPTAATAWQADRPLTRADSPDDRVAL
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCEEE
TFDVTWQKQELAKILDILDQAGVKATFFVGGTFLQLYPDMVKEIARRGHEVGTLGQQIRD
EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LSGMPENEIVSNLLGSQSALAKILGGPVRYFRPPSGKAPPEVLRAAHQARLVTVTYALDG
HCCCCHHHHHHHHHCCHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHEEEEEEEEECC
QDHLGLTADQIVRRVVRKAQRGDIIRLTASDFVTETAEALPRILEGLQRRGFKLVRISDL
CCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
VPADDG
CCCCCC
>Mature Secondary Structure
MLFIDRAWLVRRAVVVATLCLALFTISFLRSPAFQPTAATAWQADRPLTRADSPDDRVAL
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCEEE
TFDVTWQKQELAKILDILDQAGVKATFFVGGTFLQLYPDMVKEIARRGHEVGTLGQQIRD
EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LSGMPENEIVSNLLGSQSALAKILGGPVRYFRPPSGKAPPEVLRAAHQARLVTVTYALDG
HCCCCHHHHHHHHHCCHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHEEEEEEEEECC
QDHLGLTADQIVRRVVRKAQRGDIIRLTASDFVTETAEALPRILEGLQRRGFKLVRISDL
CCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
VPADDG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969501; 9384377; 8576055 [H]