| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is yqhO [H]
Identifier: 51892642
GI number: 51892642
Start: 1640900
End: 1641790
Strand: Reverse
Name: yqhO [H]
Synonym: STH1504
Alternate gene names: 51892642
Gene position: 1641790-1640900 (Counterclockwise)
Preceding gene: 51892690
Following gene: 51892641
Centisome position: 46.04
GC content: 71.49
Gene sequence:
>891_bases GTGGGCGGGCTCGCGGTCGCCGAGGAGCTGGGATGGCGGTGGAGGGCCGTGGCCGGCACGTCGGCGGGTGCCCTGGTGGC GGCCCTGGTGGCCGCCGGCTACCGGGCCCAGGAGCTGCGGGAGATCGTCCGGGACCTGGACCTGCGCAGCTTCGGCGACG CCGCGGGTCTCAAGGTCGCGAGCCTGCTGCTGCACGAAGGCATGTTCAAGGGCGAGAAGCTGCTGGCGGAGGTGGACCGG CTGCTCTCGGACCGGCTCGGGCGACCGCGGGTCACCTTCCGCGACCTGCCGGTGGCCTGCCAGATCGTGGCCACCGACCT CACCCACCGGCGCATGCTGGTCTTCCCCCGCGACCTGGCCCGACCGCCCTACTCCATGGAGGACCCGTACGACTTCCCCG TGGCCGACGCCGTCCGGGCCTCCACGGCCATCCCCTTCTTCTTCCAGCCGTACCGGCTGGAACTGCCCAACGGCGTGCGG GCCACCCTGGTGGACGGCGGACTGCTCTCCAACTTCCCGGTCCACCTGTTTCAGCCCATCGGCGGTCCGGCCTGCCTGCC CACGTTCGGCTTCGACCTGCGGGGCGGGGATGACCTGCCCCAACCCACGGACACGCCCCTGGAGCTGGTGCAGGCGATGG TGAACACGATCCTGAGCGCCCGGGACCTGAGCGCCCGGGAGAACCAGGACTACGTGCGCATCATCCCCATCGAGACGGCC CCGTACCGCACCACCCAGTTCGACATCGACGCCGACGGCAAGGAGGAGCTGTACCGGCGAGGCCGGGCGGCTGCAGAGGC CTTCTTCGCCGATCCGGAAACCCAGCGGTGGCTGGACCAGTTCGCAGTACGCCGGGCACTTCGCGCCCGCCGCCTCCCTC TCAGCGTCTGA
Upstream 100 bases:
>100_bases GATTGGGCAGAACGCCCCGAAGGGCGATCGGGAGGGCGTGCGCATGATTCGCCTGGCTCAGGCCGTGTTCAAGGGAGGCG GCGTCAAGGGCATCGCCCTG
Downstream 100 bases:
>100_bases CTGTGCGACGGCTGCGGCCGCGCACCACGCCCTCGGGAAGGAGGCGTCCGTCCATGCGCCCCGAGATCCACCCGGCCATC CGGCTGGTCGGCGGCGGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MGGLAVAEELGWRWRAVAGTSAGALVAALVAAGYRAQELREIVRDLDLRSFGDAAGLKVASLLLHEGMFKGEKLLAEVDR LLSDRLGRPRVTFRDLPVACQIVATDLTHRRMLVFPRDLARPPYSMEDPYDFPVADAVRASTAIPFFFQPYRLELPNGVR ATLVDGGLLSNFPVHLFQPIGGPACLPTFGFDLRGGDDLPQPTDTPLELVQAMVNTILSARDLSARENQDYVRIIPIETA PYRTTQFDIDADGKEELYRRGRAAAEAFFADPETQRWLDQFAVRRALRARRLPLSV
Sequences:
>Translated_296_residues MGGLAVAEELGWRWRAVAGTSAGALVAALVAAGYRAQELREIVRDLDLRSFGDAAGLKVASLLLHEGMFKGEKLLAEVDR LLSDRLGRPRVTFRDLPVACQIVATDLTHRRMLVFPRDLARPPYSMEDPYDFPVADAVRASTAIPFFFQPYRLELPNGVR ATLVDGGLLSNFPVHLFQPIGGPACLPTFGFDLRGGDDLPQPTDTPLELVQAMVNTILSARDLSARENQDYVRIIPIETA PYRTTQFDIDADGKEELYRRGRAAAEAFFADPETQRWLDQFAVRRALRARRLPLSV >Mature_295_residues GGLAVAEELGWRWRAVAGTSAGALVAALVAAGYRAQELREIVRDLDLRSFGDAAGLKVASLLLHEGMFKGEKLLAEVDRL LSDRLGRPRVTFRDLPVACQIVATDLTHRRMLVFPRDLARPPYSMEDPYDFPVADAVRASTAIPFFFQPYRLELPNGVRA TLVDGGLLSNFPVHLFQPIGGPACLPTFGFDLRGGDDLPQPTDTPLELVQAMVNTILSARDLSARENQDYVRIIPIETAP YRTTQFDIDADGKEELYRRGRAAAEAFFADPETQRWLDQFAVRRALRARRLPLSV
Specific function: Probable lipid hydrolase [H]
COG id: COG1752
COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 patatin domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016035 - InterPro: IPR002641 [H]
Pfam domain/function: PF01734 Patatin [H]
EC number: NA
Molecular weight: Translated: 32863; Mature: 32732
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGLAVAEELGWRWRAVAGTSAGALVAALVAAGYRAQELREIVRDLDLRSFGDAAGLKVA CCCHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHCCCHHHHHHH SLLLHEGMFKGEKLLAEVDRLLSDRLGRPRVTFRDLPVACQIVATDLTHRRMLVFPRDLA HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEEHHHCCCEEEECCHHHC RPPYSMEDPYDFPVADAVRASTAIPFFFQPYRLELPNGVRATLVDGGLLSNFPVHLFQPI CCCCCCCCCCCCCHHHHHHHHCCCCEEECCEEEECCCCCEEEEECCCHHCCCCHHEECCC GGPACLPTFGFDLRGGDDLPQPTDTPLELVQAMVNTILSARDLSARENQDYVRIIPIETA CCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC PYRTTQFDIDADGKEELYRRGRAAAEAFFADPETQRWLDQFAVRRALRARRLPLSV CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure GGLAVAEELGWRWRAVAGTSAGALVAALVAAGYRAQELREIVRDLDLRSFGDAAGLKVA CCHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHCCCHHHHHHH SLLLHEGMFKGEKLLAEVDRLLSDRLGRPRVTFRDLPVACQIVATDLTHRRMLVFPRDLA HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEEHHHCCCEEEECCHHHC RPPYSMEDPYDFPVADAVRASTAIPFFFQPYRLELPNGVRATLVDGGLLSNFPVHLFQPI CCCCCCCCCCCCCHHHHHHHHCCCCEEECCEEEECCCCCEEEEECCCHHCCCCHHEECCC GGPACLPTFGFDLRGGDDLPQPTDTPLELVQAMVNTILSARDLSARENQDYVRIIPIETA CCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC PYRTTQFDIDADGKEELYRRGRAAAEAFFADPETQRWLDQFAVRRALRARRLPLSV CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]