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The map label for this gene is rutD [H]

Identifier: 51892530

GI number: 51892530

Start: 1539993

End: 1540799

Strand: Reverse

Name: rutD [H]

Synonym: STH1392

Alternate gene names: 51892530

Gene position: 1540799-1539993 (Counterclockwise)

Preceding gene: 51892532

Following gene: 51892529

Centisome position: 43.21

GC content: 73.61

Gene sequence:

>807_bases
GTGTGGAAATCTCCCTCCGGAAGGAGGAGGCATCCGATGTCATTGCCCTGCGGGATCTTCGGGCCCCCGTTGGCTCCGGC
CGTCCTCTTCCTGCACGGCGGCGGCGTGAGCGGCTGGATGTGGGGGCCGGTGGTCAGCCGCCTCCAGCACCGCTTCCGCT
GCCTGGTCCCGGACCTGCCCGGTCACGGAGAACGGACCCGTGAGACGTTCACCTTCGGGCGGGCGGTAGCGGGTCTGGCC
GACCTGGTCCGCCGCGTCGCCGACGGCCCCGTGCACGTCGTCGGCGTGTCGCTTGGCGGCCAGACCGCTCTGCGGCTGAT
CGCCGCCCATCCGGAACTGGTTGGCCGGGCCCTCGTCTCAGGCACCCTGACCCGCCCCCTGCCCGGTGTTGCGCCATACC
GGTTCCTCCTCCGCCTTACCTATCCGCTGGCGCGCAGGGAGTGGATGATCCGGGCCAACGCGCGGGCGCTGGGGATCCCG
CCCGCCTACCTGGAGCCGTTCCGGAGCGACACGCTCCGGGCGACCGCCGCCGGGCTGGAGGCCGTGGTGGCGGAGAACAT
GGCGTTCCGGCCGCCCGAGGCGCTCTCCACCTCGCCGGTACCGCTGCTCGCCCTGGTGGGGGAGCGGGAGCGGCGGCTAC
TCCGCGCCTGCGCCCGCGACCTCGCCCGCACCATGCCCCACGCGAGGGCATACCTGGTCCCGGGCGCCGGGCACACCTGG
TGCCTGGAGCACCCCGACCTGTTCGCCCGGGCAGTCGCCGCACACCTGTCGGATGAGCCGCTGCCCGCCGAGCTGGTCCC
CCTCTGA

Upstream 100 bases:

>100_bases
GGACGGGCTGATCCCCCGGCCCGTCCGGCTCGGGAGTCCCGAAGCCCGGATGGGATGATCCGCTCGTTGACGGCACCACC
GCCAGGGAGCCGGGGCGCGG

Downstream 100 bases:

>100_bases
CCGGGTGCACGACTGTCTGGTGCGCGACCGTTTGTGTTAGACTATATAAACATCTCTTACAGAGGAGGGGCCGGGATGCT
GTCTGAGTTCAAGCGGTTCG

Product: putative hydrolase

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MWKSPSGRRRHPMSLPCGIFGPPLAPAVLFLHGGGVSGWMWGPVVSRLQHRFRCLVPDLPGHGERTRETFTFGRAVAGLA
DLVRRVADGPVHVVGVSLGGQTALRLIAAHPELVGRALVSGTLTRPLPGVAPYRFLLRLTYPLARREWMIRANARALGIP
PAYLEPFRSDTLRATAAGLEAVVAENMAFRPPEALSTSPVPLLALVGERERRLLRACARDLARTMPHARAYLVPGAGHTW
CLEHPDLFARAVAAHLSDEPLPAELVPL

Sequences:

>Translated_268_residues
MWKSPSGRRRHPMSLPCGIFGPPLAPAVLFLHGGGVSGWMWGPVVSRLQHRFRCLVPDLPGHGERTRETFTFGRAVAGLA
DLVRRVADGPVHVVGVSLGGQTALRLIAAHPELVGRALVSGTLTRPLPGVAPYRFLLRLTYPLARREWMIRANARALGIP
PAYLEPFRSDTLRATAAGLEAVVAENMAFRPPEALSTSPVPLLALVGERERRLLRACARDLARTMPHARAYLVPGAGHTW
CLEHPDLFARAVAAHLSDEPLPAELVPL
>Mature_268_residues
MWKSPSGRRRHPMSLPCGIFGPPLAPAVLFLHGGGVSGWMWGPVVSRLQHRFRCLVPDLPGHGERTRETFTFGRAVAGLA
DLVRRVADGPVHVVGVSLGGQTALRLIAAHPELVGRALVSGTLTRPLPGVAPYRFLLRLTYPLARREWMIRANARALGIP
PAYLEPFRSDTLRATAAGLEAVVAENMAFRPPEALSTSPVPLLALVGERERRLLRACARDLARTMPHARAYLVPGAGHTW
CLEHPDLFARAVAAHLSDEPLPAELVPL

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 29117; Mature: 29117

Theoretical pI: Translated: 11.42; Mature: 11.42

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKSPSGRRRHPMSLPCGIFGPPLAPAVLFLHGGGVSGWMWGPVVSRLQHRFRCLVPDLP
CCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHEECCCCC
GHGERTRETFTFGRAVAGLADLVRRVADGPVHVVGVSLGGQTALRLIAAHPELVGRALVS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCHHHHHHHHHH
GTLTRPLPGVAPYRFLLRLTYPLARREWMIRANARALGIPPAYLEPFRSDTLRATAAGLE
CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCEECCCHHHHHHHHHHHHHHHHHHHH
AVVAENMAFRPPEALSTSPVPLLALVGERERRLLRACARDLARTMPHARAYLVPGAGHTW
HHHHHCCCCCCCHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEE
CLEHPDLFARAVAAHLSDEPLPAELVPL
ECCCHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MWKSPSGRRRHPMSLPCGIFGPPLAPAVLFLHGGGVSGWMWGPVVSRLQHRFRCLVPDLP
CCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHEECCCCC
GHGERTRETFTFGRAVAGLADLVRRVADGPVHVVGVSLGGQTALRLIAAHPELVGRALVS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCHHHHHHHHHH
GTLTRPLPGVAPYRFLLRLTYPLARREWMIRANARALGIPPAYLEPFRSDTLRATAAGLE
CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCEECCCHHHHHHHHHHHHHHHHHHHH
AVVAENMAFRPPEALSTSPVPLLALVGERERRLLRACARDLARTMPHARAYLVPGAGHTW
HHHHHCCCCCCCHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEE
CLEHPDLFARAVAAHLSDEPLPAELVPL
ECCCHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA