| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is gluD [H]
Identifier: 51892334
GI number: 51892334
Start: 1326852
End: 1328105
Strand: Reverse
Name: gluD [H]
Synonym: STH1196
Alternate gene names: 51892334
Gene position: 1328105-1326852 (Counterclockwise)
Preceding gene: 51892370
Following gene: 51892333
Centisome position: 37.24
GC content: 68.98
Gene sequence:
>1254_bases ATGACTGGCCAGGAGTTCTTCCGAGATACCCAGGAGACGATTCGTGCTGCCGTCGCGAAACTGGGCCACTCGGAAGGCGT CTACAAGATCCTGCGTAACCCTCGTCGTACGCTTGAGGTTCACATTGCGGTGACGATGCCCGACGGATCCGTTGAGACCT TCCTGGGTTACCGGTCGCAGCACGCCGCCGTCTTCGGCCCCTACAAGGGCGGCGTCCGGTTCCACCCCAACGTCACCAAG GAAGAGGTCGAGGCGCTGGCGATGCTCATGACCCTGAAGAACGCCGTGCTCGGCCTGCCTTACGGGGGCGCCAAGGGAGG CGTCATCTGCGATCCCAACGCCCTGCCGCCCACCGCGGTGGAGCAGATCGCCCGGGGCTACGTGCGCGGGCTGCGTGACA TGATCGGTCCCGATACGGACATCCCCGCGCCGGACGTCAACACCAACTCCCGGGTCATGGGCTGGATGCTCGACGAGTAC CTGAAGTGCACCAACGCCATCGACTTCTCGGTCTTCACCGGCAAGAGCCTCAACCTGGGCGGCATTGAGGGCCGCACCGG GGCCACCGGCCTCGGCATCGCCTACGTGACCCGCGAGGCCTGCAAGGTCCGGGGGGTGGACCTGAAGGGCGCCAGGGTCG CCGTGCAGGGCTTTGGCAACGTGGGCCGCGGCGCGGCGCAGGCCCTCACCGCGCTGGGGGCCAGGATCGTCGGCGTCACC GACATCACCGGCGGCGTCTACAAGGAGGACGGCCTCGACGTGGCCGCGCTGACGGAGTACGCCAGGGACCGCGGCGGCGT CGCCGGCTTCCCCGGCGCCGAGCCCCTCACCAACGAGCAGCTCTTCGCCCTGCCGGTGGATGTGCTGATCCCGGCGGCCT TGGAGGGACAGATCACGGGCAAGGTCGCCGAGACCATCCAGGCGCCGATCGTGGTGGAGGGCGCCAACGGCCCGACCACC CCCGAGGGCGCCCAGGTGCTGGCGGACCGGGGCATCATGCAGGTCCCGGACATCCTGGCCAACGGCGGCGGCGTGACCGT CTCTTATTTCGAGTGGGTGCAGGGCCAGCAGGGCGGCCTCCGCTGGTCCGAACGCACCGTGCACCGCCGCCTCGACCGGT ACATGACCAGCGCCTTCGCCGCCGTGCTGGCGTACAGCGAGCGCTACAACGTCTCCATGCGTGAGGCGGCCTACCTGTTC GCCGTGGACCGGCTCGCCACCGGCATGATCGAGCGCGGCTGGGTCCCGAGGTAG
Upstream 100 bases:
>100_bases GGGGGCGTTCGCCCCCCCTCCGGCGGCAGGACTGGCGACCAGGCGTGCTGAATACAGCCATGGGTGTCCGTACCGAAGGA TCGAAGGGAGGATCTCACTC
Downstream 100 bases:
>100_bases CCCGACCGGCCGCGCGGCGCTGATCAGTTCGCAGGGCATGACGCGCCAGGCCGGAACCCCCGACGGTTCCGGCCTGGCGC CTATAAGGCCGGGGCGGCGC
Product: glutamate/leucine dehydrogenase
Products: NA
Alternate protein names: NAD-GDH [H]
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MTGQEFFRDTQETIRAAVAKLGHSEGVYKILRNPRRTLEVHIAVTMPDGSVETFLGYRSQHAAVFGPYKGGVRFHPNVTK EEVEALAMLMTLKNAVLGLPYGGAKGGVICDPNALPPTAVEQIARGYVRGLRDMIGPDTDIPAPDVNTNSRVMGWMLDEY LKCTNAIDFSVFTGKSLNLGGIEGRTGATGLGIAYVTREACKVRGVDLKGARVAVQGFGNVGRGAAQALTALGARIVGVT DITGGVYKEDGLDVAALTEYARDRGGVAGFPGAEPLTNEQLFALPVDVLIPAALEGQITGKVAETIQAPIVVEGANGPTT PEGAQVLADRGIMQVPDILANGGGVTVSYFEWVQGQQGGLRWSERTVHRRLDRYMTSAFAAVLAYSERYNVSMREAAYLF AVDRLATGMIERGWVPR
Sequences:
>Translated_417_residues MTGQEFFRDTQETIRAAVAKLGHSEGVYKILRNPRRTLEVHIAVTMPDGSVETFLGYRSQHAAVFGPYKGGVRFHPNVTK EEVEALAMLMTLKNAVLGLPYGGAKGGVICDPNALPPTAVEQIARGYVRGLRDMIGPDTDIPAPDVNTNSRVMGWMLDEY LKCTNAIDFSVFTGKSLNLGGIEGRTGATGLGIAYVTREACKVRGVDLKGARVAVQGFGNVGRGAAQALTALGARIVGVT DITGGVYKEDGLDVAALTEYARDRGGVAGFPGAEPLTNEQLFALPVDVLIPAALEGQITGKVAETIQAPIVVEGANGPTT PEGAQVLADRGIMQVPDILANGGGVTVSYFEWVQGQQGGLRWSERTVHRRLDRYMTSAFAAVLAYSERYNVSMREAAYLF AVDRLATGMIERGWVPR >Mature_416_residues TGQEFFRDTQETIRAAVAKLGHSEGVYKILRNPRRTLEVHIAVTMPDGSVETFLGYRSQHAAVFGPYKGGVRFHPNVTKE EVEALAMLMTLKNAVLGLPYGGAKGGVICDPNALPPTAVEQIARGYVRGLRDMIGPDTDIPAPDVNTNSRVMGWMLDEYL KCTNAIDFSVFTGKSLNLGGIEGRTGATGLGIAYVTREACKVRGVDLKGARVAVQGFGNVGRGAAQALTALGARIVGVTD ITGGVYKEDGLDVAALTEYARDRGGVAGFPGAEPLTNEQLFALPVDVLIPAALEGQITGKVAETIQAPIVVEGANGPTTP EGAQVLADRGIMQVPDILANGGGVTVSYFEWVQGQQGGLRWSERTVHRRLDRYMTSAFAAVLAYSERYNVSMREAAYLFA VDRLATGMIERGWVPR
Specific function: Unknown
COG id: COG0334
COG function: function code E; Glutamate dehydrogenase/leucine dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Glu/Leu/Phe/Val dehydrogenases family [H]
Homologues:
Organism=Homo sapiens, GI31377775, Length=342, Percent_Identity=38.3040935672515, Blast_Score=243, Evalue=2e-64, Organism=Homo sapiens, GI4885281, Length=360, Percent_Identity=38.0555555555556, Blast_Score=241, Evalue=9e-64, Organism=Escherichia coli, GI1788059, Length=394, Percent_Identity=32.2335025380711, Blast_Score=179, Evalue=3e-46, Organism=Caenorhabditis elegans, GI17544676, Length=347, Percent_Identity=36.8876080691643, Blast_Score=218, Evalue=4e-57, Organism=Saccharomyces cerevisiae, GI6324951, Length=426, Percent_Identity=29.3427230046948, Blast_Score=158, Evalue=2e-39, Organism=Saccharomyces cerevisiae, GI6319256, Length=460, Percent_Identity=28.9130434782609, Blast_Score=154, Evalue=3e-38, Organism=Drosophila melanogaster, GI24649283, Length=332, Percent_Identity=40.0602409638554, Blast_Score=251, Evalue=9e-67, Organism=Drosophila melanogaster, GI45549226, Length=344, Percent_Identity=38.0813953488372, Blast_Score=243, Evalue=2e-64, Organism=Drosophila melanogaster, GI45553475, Length=344, Percent_Identity=38.0813953488372, Blast_Score=243, Evalue=2e-64, Organism=Drosophila melanogaster, GI24649460, Length=278, Percent_Identity=39.568345323741, Blast_Score=200, Evalue=1e-51,
Paralogues:
None
Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 9362 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006095 - InterPro: IPR006096 - InterPro: IPR006097 - InterPro: IPR014362 - InterPro: IPR016040 [H]
Pfam domain/function: PF00208 ELFV_dehydrog; PF02812 ELFV_dehydrog_N [H]
EC number: =1.4.1.2 [H]
Molecular weight: Translated: 44560; Mature: 44428
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: PS00074 GLFV_DEHYDROGENASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGQEFFRDTQETIRAAVAKLGHSEGVYKILRNPRRTLEVHIAVTMPDGSVETFLGYRSQ CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEEEEEECCCCCHHHHHCCCCC HAAVFGPYKGGVRFHPNVTKEEVEALAMLMTLKNAVLGLPYGGAKGGVICDPNALPPTAV CCEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHH EQIARGYVRGLRDMIGPDTDIPAPDVNTNSRVMGWMLDEYLKCTNAIDFSVFTGKSLNLG HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC GIEGRTGATGLGIAYVTREACKVRGVDLKGARVAVQGFGNVGRGAAQALTALGARIVGVT CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHEEEEE DITGGVYKEDGLDVAALTEYARDRGGVAGFPGAEPLTNEQLFALPVDVLIPAALEGQITG ECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHHHHCHHHCCCCHH KVAETIQAPIVVEGANGPTTPEGAQVLADRGIMQVPDILANGGGVTVSYFEWVQGQQGGL HHHHHHCCCEEEECCCCCCCCCHHHHHHHCCCHHCCHHHHCCCCEEEEHHHHHCCCCCCC RWSERTVHRRLDRYMTSAFAAVLAYSERYNVSMREAAYLFAVDRLATGMIERGWVPR CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TGQEFFRDTQETIRAAVAKLGHSEGVYKILRNPRRTLEVHIAVTMPDGSVETFLGYRSQ CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEEEEEECCCCCHHHHHCCCCC HAAVFGPYKGGVRFHPNVTKEEVEALAMLMTLKNAVLGLPYGGAKGGVICDPNALPPTAV CCEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHH EQIARGYVRGLRDMIGPDTDIPAPDVNTNSRVMGWMLDEYLKCTNAIDFSVFTGKSLNLG HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC GIEGRTGATGLGIAYVTREACKVRGVDLKGARVAVQGFGNVGRGAAQALTALGARIVGVT CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHEEEEE DITGGVYKEDGLDVAALTEYARDRGGVAGFPGAEPLTNEQLFALPVDVLIPAALEGQITG ECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHHHHCHHHCCCCHH KVAETIQAPIVVEGANGPTTPEGAQVLADRGIMQVPDILANGGGVTVSYFEWVQGQQGGL HHHHHHCCCEEEECCCCCCCCCHHHHHHHCCCHHCCHHHHCCCCEEEEHHHHHCCCCCCC RWSERTVHRRLDRYMTSAFAAVLAYSERYNVSMREAAYLFAVDRLATGMIERGWVPR CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA