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The map label for this gene is pdaB [H]

Identifier: 51892151

GI number: 51892151

Start: 1129393

End: 1130184

Strand: Reverse

Name: pdaB [H]

Synonym: STH1013

Alternate gene names: 51892151

Gene position: 1130184-1129393 (Counterclockwise)

Preceding gene: 51892158

Following gene: 51892150

Centisome position: 31.69

GC content: 68.69

Gene sequence:

>792_bases
ATGAAGATGCACCGCACGCCGACCCGCAGGAGGGCGCTTCTCCTGGCCGCGGTCCTGATGGGCGCGGCTCTGGCCCTGCC
CGCCGGAACGGCCCGGGCACGGGTGACGGAGCGCAACGACGCCGCGCCGGTGAGCGCCTCGCTGCAGCCCACCCTGCGTC
CGATTTACTCCGCCAGGACCGAGGACAAGGTGGTCGCCCTCACCTTCGACATCTCGTGGGGAAACCAGATGGCTCCCAAG
GTGCTGGAGGTACTGCGTAACGAGAAGGTGCCCGCGACCTTCTTCCTCTCGGGCCCCTGGGCGAAGAATCACGCGGAGCT
GGTGAAACAGATCCAGGCGGACGGCCACGAGATCGAGTCCCACGGCCACGCGCACGTCGACCTCAACACGCTGGGCCGCG
AGGGCGCTGCCCGGAACATCGCCGCCGCCCACGCGATCCTGAAGGAGCTGACGGGCCGGGACCCCACCTACATCCGGCCG
CCCAACGGCGCGTTCAACGAGGCCTCGGTGCAGGCGGCGAAGGACCTGGGCTACGCGACGGTCATCTGGTCCGTGGATTC
GCTGGACTGGAAGAACCCGGGGGTGGACCGCATCGTGAACCGCACCGTCCGGCTGGCCCACCCCGGCGCCATCATCCTGA
TGCACGCCAGCGACTCCTGCAAGCAGACCGACCAGGCGCTGCCGGCCATCATCCGCTCGCTGCGGGAACAGGGCTACCGA
TTTCTCCTGCTGGACGACCTGATCCGCACCTACGGCGTGGACATGAACGGGCACATCCGGGTGCTGCGCTAG

Upstream 100 bases:

>100_bases
TGCCAGGCGTACCAATATTCGCCGGAGGCCGCGAGGTATGGGACGCGGGCGCCGCACGCACACTTTGGGCAGCCTTGCGA
AGTCTCGCCAAGGGAGGGGC

Downstream 100 bases:

>100_bases
GCCCGGGCGGGCCCGCGCAACCGCGCGCGGACGGGGCCCGTCTAACGGAGAGACGGCGGCTCCACCCCCACGTTGACGGA
ATGAGGCGGCCGCTGGTAAA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKMHRTPTRRRALLLAAVLMGAALALPAGTARARVTERNDAAPVSASLQPTLRPIYSARTEDKVVALTFDISWGNQMAPK
VLEVLRNEKVPATFFLSGPWAKNHAELVKQIQADGHEIESHGHAHVDLNTLGREGAARNIAAAHAILKELTGRDPTYIRP
PNGAFNEASVQAAKDLGYATVIWSVDSLDWKNPGVDRIVNRTVRLAHPGAIILMHASDSCKQTDQALPAIIRSLREQGYR
FLLLDDLIRTYGVDMNGHIRVLR

Sequences:

>Translated_263_residues
MKMHRTPTRRRALLLAAVLMGAALALPAGTARARVTERNDAAPVSASLQPTLRPIYSARTEDKVVALTFDISWGNQMAPK
VLEVLRNEKVPATFFLSGPWAKNHAELVKQIQADGHEIESHGHAHVDLNTLGREGAARNIAAAHAILKELTGRDPTYIRP
PNGAFNEASVQAAKDLGYATVIWSVDSLDWKNPGVDRIVNRTVRLAHPGAIILMHASDSCKQTDQALPAIIRSLREQGYR
FLLLDDLIRTYGVDMNGHIRVLR
>Mature_263_residues
MKMHRTPTRRRALLLAAVLMGAALALPAGTARARVTERNDAAPVSASLQPTLRPIYSARTEDKVVALTFDISWGNQMAPK
VLEVLRNEKVPATFFLSGPWAKNHAELVKQIQADGHEIESHGHAHVDLNTLGREGAARNIAAAHAILKELTGRDPTYIRP
PNGAFNEASVQAAKDLGYATVIWSVDSLDWKNPGVDRIVNRTVRLAHPGAIILMHASDSCKQTDQALPAIIRSLREQGYR
FLLLDDLIRTYGVDMNGHIRVLR

Specific function: Necessary to maintain spores after the late stage of sporulation. Might be involved in cortex formation [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Forespore. Note=Produced in the mother cell compartment and transported into the forespore [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014132 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28921; Mature: 28921

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMHRTPTRRRALLLAAVLMGAALALPAGTARARVTERNDAAPVSASLQPTLRPIYSART
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCCCCCHHHHHHHHCCC
EDKVVALTFDISWGNQMAPKVLEVLRNEKVPATFFLSGPWAKNHAELVKQIQADGHEIES
CCEEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCHHC
HGHAHVDLNTLGREGAARNIAAAHAILKELTGRDPTYIRPPNGAFNEASVQAAKDLGYAT
CCCEEEEHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCEEE
VIWSVDSLDWKNPGVDRIVNRTVRLAHPGAIILMHASDSCKQTDQALPAIIRSLREQGYR
EEEEECCCCCCCCCHHHHHHHHEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCE
FLLLDDLIRTYGVDMNGHIRVLR
EEHHHHHHHHHCCCCCCCEEEEC
>Mature Secondary Structure
MKMHRTPTRRRALLLAAVLMGAALALPAGTARARVTERNDAAPVSASLQPTLRPIYSART
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCCCCCHHHHHHHHCCC
EDKVVALTFDISWGNQMAPKVLEVLRNEKVPATFFLSGPWAKNHAELVKQIQADGHEIES
CCEEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCHHC
HGHAHVDLNTLGREGAARNIAAAHAILKELTGRDPTYIRPPNGAFNEASVQAAKDLGYAT
CCCEEEEHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCEEE
VIWSVDSLDWKNPGVDRIVNRTVRLAHPGAIILMHASDSCKQTDQALPAIIRSLREQGYR
EEEEECCCCCCCCCHHHHHHHHEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCE
FLLLDDLIRTYGVDMNGHIRVLR
EEHHHHHHHHHCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969501; 9384377; 8576055 [H]