Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is 51892080

Identifier: 51892080

GI number: 51892080

Start: 1056727

End: 1057497

Strand: Reverse

Name: 51892080

Synonym: STH942

Alternate gene names: NA

Gene position: 1057497-1056727 (Counterclockwise)

Preceding gene: 51892082

Following gene: 51892076

Centisome position: 29.65

GC content: 73.02

Gene sequence:

>771_bases
ATGGACATGTCCCTGCCCCCTGATGTCGCCGAACTCATGCAGAGCTTCGCCTCAGGCCTCAGACGGGTGCTCGGCGAGAA
GCTGGTGGGCGTCTACCTGGGCGGGTCGGTCTCGCTCGGGGATTACTGCGCCGGGAGCAGCGACCTGGACTTCCTGGTGG
TCACCGACGGGCGCCTCTCCCCGGCGGACCTGGACGCCCTGGCGGTCTTCCACCGGGAGTTCCTGACGGCCCACCCCTCC
GCAGGCCGGCTGGAGGGGGACTACGCGCCGCGGGAGTGCATCATCCCCGAGGGCACGACGGTCCCGGTGCCCCGGTGCAA
GCGGGGAGCCTTCGTGCCGGAGGTGGACCAGGTGATGCTCTCCGCCGACAACATCTGCAACATGCGGGAGAACGGTATCG
CCTTCTACGGGCCCCCGCCGGCCGAAGTGCTCCCGCCGGTCAGCCCCGACCAGGTGAGGGCGGCCGTCCGGGCGATGCTG
GCGGAGGCGCCGAAGCCCGCGCAGCGGCCCGAGGAGCAGGCGGACGAGCTGCTGGACCTGCTCCGCTCCCTGTGCGCCCT
GGAGACGGGAAAACCGACCACCAAGGCGCAGGGCGCCGAATGGGCGCGCCGACACCTGGAGCCCCGATGGCACCCGGTGG
TCGACGCGGCGCTGGCGGTCCGCCGCGGGGGCCCGGCGGCGGGCTGGGACGAAGGCATGGCCCGCTCCGCGGCCGAGCTG
GACCGGCTCCTGAGGGAGCGGTACGCAATCGCGGCGCAGCCGCCCTCCTGA

Upstream 100 bases:

>100_bases
GCGGGCCTCCCCGGCCGCCGGTCGAAACGGGTGGCCGGACCCTCTCCGTCCAATTCGGATGAGCCCCGCCTGGCAACTAC
GACATTCAAGGAGGACGTAC

Downstream 100 bases:

>100_bases
CCGATCCGGCCGCTAACCCGGAGGCCCTCCCCCGAAGCGCTCCAGCAGAAGCTCTTCCGGCGTCAGGGCCGGCTGGGCGA
CGAAGTGCACCACCTGCCAC

Product: putative nucleotidyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MDMSLPPDVAELMQSFASGLRRVLGEKLVGVYLGGSVSLGDYCAGSSDLDFLVVTDGRLSPADLDALAVFHREFLTAHPS
AGRLEGDYAPRECIIPEGTTVPVPRCKRGAFVPEVDQVMLSADNICNMRENGIAFYGPPPAEVLPPVSPDQVRAAVRAML
AEAPKPAQRPEEQADELLDLLRSLCALETGKPTTKAQGAEWARRHLEPRWHPVVDAALAVRRGGPAAGWDEGMARSAAEL
DRLLRERYAIAAQPPS

Sequences:

>Translated_256_residues
MDMSLPPDVAELMQSFASGLRRVLGEKLVGVYLGGSVSLGDYCAGSSDLDFLVVTDGRLSPADLDALAVFHREFLTAHPS
AGRLEGDYAPRECIIPEGTTVPVPRCKRGAFVPEVDQVMLSADNICNMRENGIAFYGPPPAEVLPPVSPDQVRAAVRAML
AEAPKPAQRPEEQADELLDLLRSLCALETGKPTTKAQGAEWARRHLEPRWHPVVDAALAVRRGGPAAGWDEGMARSAAEL
DRLLRERYAIAAQPPS
>Mature_256_residues
MDMSLPPDVAELMQSFASGLRRVLGEKLVGVYLGGSVSLGDYCAGSSDLDFLVVTDGRLSPADLDALAVFHREFLTAHPS
AGRLEGDYAPRECIIPEGTTVPVPRCKRGAFVPEVDQVMLSADNICNMRENGIAFYGPPPAEVLPPVSPDQVRAAVRAML
AEAPKPAQRPEEQADELLDLLRSLCALETGKPTTKAQGAEWARRHLEPRWHPVVDAALAVRRGGPAAGWDEGMARSAAEL
DRLLRERYAIAAQPPS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27588; Mature: 27588

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMSLPPDVAELMQSFASGLRRVLGEKLVGVYLGGSVSLGDYCAGSSDLDFLVVTDGRLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCC
PADLDALAVFHREFLTAHPSAGRLEGDYAPRECIIPEGTTVPVPRCKRGAFVPEVDQVML
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHH
SADNICNMRENGIAFYGPPPAEVLPPVSPDQVRAAVRAMLAEAPKPAQRPEEQADELLDL
HHHHHCCHHHCCEEEECCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LRSLCALETGKPTTKAQGAEWARRHLEPRWHPVVDAALAVRRGGPAAGWDEGMARSAAEL
HHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
DRLLRERYAIAAQPPS
HHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDMSLPPDVAELMQSFASGLRRVLGEKLVGVYLGGSVSLGDYCAGSSDLDFLVVTDGRLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCC
PADLDALAVFHREFLTAHPSAGRLEGDYAPRECIIPEGTTVPVPRCKRGAFVPEVDQVML
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHH
SADNICNMRENGIAFYGPPPAEVLPPVSPDQVRAAVRAMLAEAPKPAQRPEEQADELLDL
HHHHHCCHHHCCEEEECCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LRSLCALETGKPTTKAQGAEWARRHLEPRWHPVVDAALAVRRGGPAAGWDEGMARSAAEL
HHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
DRLLRERYAIAAQPPS
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA