| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51891952
Identifier: 51891952
GI number: 51891952
Start: 914282
End: 915037
Strand: Reverse
Name: 51891952
Synonym: STH814
Alternate gene names: NA
Gene position: 915037-914282 (Counterclockwise)
Preceding gene: 51891953
Following gene: 51891948
Centisome position: 25.66
GC content: 74.21
Gene sequence:
>756_bases ATGGCCGCCGGGGTAGGTTCACCTGGCGCTGGGCACCCCGGGCTCCGGCACCCCGGGACCGGGGCTCCCGAGACCGCGTA TTCCGGGACCGGTGACTTCGACCGGCTGATCCTGCACGAGACGCCCTACGGGAAGGTGGAACAGCGGGGCCCCGTGCTCA TGCGGACGGCGGAGGCCGACCCCCGGGCCCTGATCTACGCAGCCAAGGCGGCGGGCGCGTCCGCCGTTCTGGCCGCGGCG CGGGTCGAACCGGTCAGCCCCCTCCTGGAGCCGGGCGACCTGGTCGTCCCGGTGGACGTGATCGACCTCACCCGCCTGCT CCCCCCGACCTTCTTCGTGGGGAAGGGCTACGGGTTCATCCGGCTCGACCCGCCGTTCTGCCCGGAGCTGTCGGCGGCCT TGTATGCCGCGGGGCGCGAAAAGACCCCCCGGGCGTTCCGGGGGGCGACGTACGTGGGGCTGGACGGATCCCGGGAGGCG ACGCCGGCCGAGCGGCGGATGTACCGCGCCTGGGGCGCGGACGTCGTCGGTTCCGGGCTGGTGCCGGAGGCGTTTCTCGC CCGGGAGCTGGAGCTGTGCTACGCCGCGCTGACGGTGGTCAGGGAGGCGCAGGCAGACGTACTGGCTGTTCTGGAGCGGG CCGCGCAGCTGGCCCCGGTCCGGCGAAGCTGCAGCTGCGGGCGGGCGATGGCCGGCGCCCGGGCGCAGGGGCTGATTGGC GAGGACTGGCGGGAGTGGGTGCGGGGCAACATGTGA
Upstream 100 bases:
>100_bases GGGCCGGAGGTGGGACAGCTAATGTTCCGGATCATGCTGCGGCTGCTGGAGGAGGAGGCGAATGCATATGGGTGAGGTGC TGTTCATCCTGCCGGAGGCG
Downstream 100 bases:
>100_bases CAGCTGATAGCAGTAGCACTACGGCATGGGAACGTCGCTAGTTCTTGGGGAACCAGAACTATCACCGATAGACAACCCAC TTATCGCCACGCTTCGTAAC
Product: methylthioadenosine phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MAAGVGSPGAGHPGLRHPGTGAPETAYSGTGDFDRLILHETPYGKVEQRGPVLMRTAEADPRALIYAAKAAGASAVLAAA RVEPVSPLLEPGDLVVPVDVIDLTRLLPPTFFVGKGYGFIRLDPPFCPELSAALYAAGREKTPRAFRGATYVGLDGSREA TPAERRMYRAWGADVVGSGLVPEAFLARELELCYAALTVVREAQADVLAVLERAAQLAPVRRSCSCGRAMAGARAQGLIG EDWREWVRGNM
Sequences:
>Translated_251_residues MAAGVGSPGAGHPGLRHPGTGAPETAYSGTGDFDRLILHETPYGKVEQRGPVLMRTAEADPRALIYAAKAAGASAVLAAA RVEPVSPLLEPGDLVVPVDVIDLTRLLPPTFFVGKGYGFIRLDPPFCPELSAALYAAGREKTPRAFRGATYVGLDGSREA TPAERRMYRAWGADVVGSGLVPEAFLARELELCYAALTVVREAQADVLAVLERAAQLAPVRRSCSCGRAMAGARAQGLIG EDWREWVRGNM >Mature_250_residues AAGVGSPGAGHPGLRHPGTGAPETAYSGTGDFDRLILHETPYGKVEQRGPVLMRTAEADPRALIYAAKAAGASAVLAAAR VEPVSPLLEPGDLVVPVDVIDLTRLLPPTFFVGKGYGFIRLDPPFCPELSAALYAAGREKTPRAFRGATYVGLDGSREAT PAERRMYRAWGADVVGSGLVPEAFLARELELCYAALTVVREAQADVLAVLERAAQLAPVRRSCSCGRAMAGARAQGLIGE DWREWVRGNM
Specific function: Unknown
COG id: COG0005
COG function: function code F; Purine nucleoside phosphorylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PNP/MTAP phosphorylase family [H]
Homologues:
Organism=Homo sapiens, GI47132622, Length=146, Percent_Identity=31.5068493150685, Blast_Score=88, Evalue=7e-18, Organism=Caenorhabditis elegans, GI71980569, Length=146, Percent_Identity=28.7671232876712, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323045, Length=155, Percent_Identity=29.6774193548387, Blast_Score=70, Evalue=4e-13, Organism=Drosophila melanogaster, GI221459247, Length=154, Percent_Identity=32.4675324675325, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI20130079, Length=148, Percent_Identity=29.7297297297297, Blast_Score=74, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010044 - InterPro: IPR000845 - InterPro: IPR001369 - InterPro: IPR018099 [H]
Pfam domain/function: PF01048 PNP_UDP_1 [H]
EC number: NA
Molecular weight: Translated: 26568; Mature: 26436
Theoretical pI: Translated: 7.38; Mature: 7.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAGVGSPGAGHPGLRHPGTGAPETAYSGTGDFDRLILHETPYGKVEQRGPVLMRTAEAD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCC PRALIYAAKAAGASAVLAAARVEPVSPLLEPGDLVVPVDVIDLTRLLPPTFFVGKGYGFI CCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCCEEEECCEEEE RLDPPFCPELSAALYAAGREKTPRAFRGATYVGLDGSREATPAERRMYRAWGADVVGSGL EECCCCCCHHHHHHHHCCCCCCCHHHCCCEEEECCCCCCCCHHHHHHHHHHCCHHHCCCC VPEAFLARELELCYAALTVVREAQADVLAVLERAAQLAPVRRSCSCGRAMAGARAQGLIG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC EDWREWVRGNM HHHHHHHCCCC >Mature Secondary Structure AAGVGSPGAGHPGLRHPGTGAPETAYSGTGDFDRLILHETPYGKVEQRGPVLMRTAEAD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCC PRALIYAAKAAGASAVLAAARVEPVSPLLEPGDLVVPVDVIDLTRLLPPTFFVGKGYGFI CCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCCEEEECCEEEE RLDPPFCPELSAALYAAGREKTPRAFRGATYVGLDGSREATPAERRMYRAWGADVVGSGL EECCCCCCHHHHHHHHCCCCCCCHHHCCCEEEECCCCCCCCHHHHHHHHHHCCHHHCCCC VPEAFLARELELCYAALTVVREAQADVLAVLERAAQLAPVRRSCSCGRAMAGARAQGLIG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC EDWREWVRGNM HHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12622808 [H]