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The map label for this gene is ymdB [C]

Identifier: 51891824

GI number: 51891824

Start: 754945

End: 755481

Strand: Reverse

Name: ymdB [C]

Synonym: STH686

Alternate gene names: 51891824

Gene position: 755481-754945 (Counterclockwise)

Preceding gene: 51891826

Following gene: 51891821

Centisome position: 21.18

GC content: 72.25

Gene sequence:

>537_bases
ATGAGCACCTGGCTGGACGGACGGATCGAGATCGTCACGGCCGACATCACGACGCTGCACGTGGACGTGATCGTCAACGC
CGCCAACCCGAGCCTGCTGGGCGGCGGCGGGGTGGACGGCGCGATCCACCGGGCGGCGGGCCCGCAACTCCTGGAGGAGT
GCCGCACCCTGGGCGGCGCCCGGCCCGGCGAGGTGAAGATGACCAAGGGATACCGGCTGCCGGCGAAGGCCGTCGCGCAC
GCGGTCGGGCCCATCTGGCGGGGCGGGAACCACGGCGAGGCGGAGACCCTGGCCTCCTGCTACCGACGCGCCCTGGAGCT
GGCGGAAGCCGCCGGCTACCGCACCATCGCCTTCCCCTCCATCTCCACCGGCGCCTACGGGTACCCCATCGAGCAGGCGG
CCCGGGTGGCCCAGGCGACGGTGAAGGCGTACCTGCTGGAGAACGACTCGCCGCTCAGGGTCACCTTCTGCTGCTACAGC
CCCGGCGACACCCGGGTCTACGAGCAGGTGGCCGGGGAGATCCTGGGCGCTTCCTAG

Upstream 100 bases:

>100_bases
CCGTACCCCTCCGTCCCGGACCCCGCGGCAGGGGGAGCGGCAGGATTCGCATGCGCTCTCCCTGAACCTTCAAACAGAAC
CCCGGTTGGAGGGATACGGA

Downstream 100 bases:

>100_bases
GCGGTCCGGCCGCTTTTTCGGCGGAGACAGTGTTGATCCTGGTCTGCGCGCACAGCGGGGAGGGCATCTGCCCTCCCCGC
TCTCTATGTGGCCGCACCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MSTWLDGRIEIVTADITTLHVDVIVNAANPSLLGGGGVDGAIHRAAGPQLLEECRTLGGARPGEVKMTKGYRLPAKAVAH
AVGPIWRGGNHGEAETLASCYRRALELAEAAGYRTIAFPSISTGAYGYPIEQAARVAQATVKAYLLENDSPLRVTFCCYS
PGDTRVYEQVAGEILGAS

Sequences:

>Translated_178_residues
MSTWLDGRIEIVTADITTLHVDVIVNAANPSLLGGGGVDGAIHRAAGPQLLEECRTLGGARPGEVKMTKGYRLPAKAVAH
AVGPIWRGGNHGEAETLASCYRRALELAEAAGYRTIAFPSISTGAYGYPIEQAARVAQATVKAYLLENDSPLRVTFCCYS
PGDTRVYEQVAGEILGAS
>Mature_177_residues
STWLDGRIEIVTADITTLHVDVIVNAANPSLLGGGGVDGAIHRAAGPQLLEECRTLGGARPGEVKMTKGYRLPAKAVAHA
VGPIWRGGNHGEAETLASCYRRALELAEAAGYRTIAFPSISTGAYGYPIEQAARVAQATVKAYLLENDSPLRVTFCCYSP
GDTRVYEQVAGEILGAS

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=173, Percent_Identity=50.2890173410405, Blast_Score=167, Evalue=4e-42,
Organism=Homo sapiens, GI13569840, Length=165, Percent_Identity=50.3030303030303, Blast_Score=157, Evalue=5e-39,
Organism=Homo sapiens, GI207450721, Length=142, Percent_Identity=36.6197183098592, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI8923143, Length=142, Percent_Identity=36.6197183098592, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI154813199, Length=137, Percent_Identity=37.956204379562, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI20336746, Length=176, Percent_Identity=30.1136363636364, Blast_Score=77, Evalue=6e-15,
Organism=Homo sapiens, GI165377137, Length=163, Percent_Identity=31.9018404907975, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI226371718, Length=158, Percent_Identity=31.0126582278481, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI226371716, Length=158, Percent_Identity=31.0126582278481, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI226371714, Length=158, Percent_Identity=31.0126582278481, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI226371712, Length=158, Percent_Identity=31.0126582278481, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI226371710, Length=158, Percent_Identity=31.0126582278481, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI226371706, Length=158, Percent_Identity=31.0126582278481, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI1787283, Length=170, Percent_Identity=49.4117647058824, Blast_Score=163, Evalue=6e-42,
Organism=Caenorhabditis elegans, GI17538214, Length=170, Percent_Identity=44.1176470588235, Blast_Score=131, Evalue=2e-31,
Organism=Drosophila melanogaster, GI24586353, Length=169, Percent_Identity=36.094674556213, Blast_Score=95, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18757; Mature: 18626

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTWLDGRIEIVTADITTLHVDVIVNAANPSLLGGGGVDGAIHRAAGPQLLEECRTLGGA
CCCCCCCEEEEEEECCEEEEEEEEEECCCCCEECCCCCCCHHHHCCCHHHHHHHHHHCCC
RPGEVKMTKGYRLPAKAVAHAVGPIWRGGNHGEAETLASCYRRALELAEAAGYRTIAFPS
CCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCC
ISTGAYGYPIEQAARVAQATVKAYLLENDSPLRVTFCCYSPGDTRVYEQVAGEILGAS
CCCCCCCCCHHHHHHHHHHHHHHHEECCCCCEEEEEEEECCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STWLDGRIEIVTADITTLHVDVIVNAANPSLLGGGGVDGAIHRAAGPQLLEECRTLGGA
CCCCCCEEEEEEECCEEEEEEEEEECCCCCEECCCCCCCHHHHCCCHHHHHHHHHHCCC
RPGEVKMTKGYRLPAKAVAHAVGPIWRGGNHGEAETLASCYRRALELAEAAGYRTIAFPS
CCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCC
ISTGAYGYPIEQAARVAQATVKAYLLENDSPLRVTFCCYSPGDTRVYEQVAGEILGAS
CCCCCCCCCHHHHHHHHHHHHHHHEECCCCCEEEEEEEECCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]