Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

Click here to switch to the map view.

The map label for this gene is cstA [H]

Identifier: 51891821

GI number: 51891821

Start: 751922

End: 753697

Strand: Reverse

Name: cstA [H]

Synonym: STH683

Alternate gene names: 51891821

Gene position: 753697-751922 (Counterclockwise)

Preceding gene: 51891824

Following gene: 51891820

Centisome position: 21.13

GC content: 66.33

Gene sequence:

>1776_bases
ATGAGCTCACCGGCCCTGTTCGTTCTGCTTGCGCTGGTTGCCTATGGCATCGCGTACTTCGGGTACGGCAAGTGGTTCGA
CCGGAACGTGTGGAAACCGGATCCCAAGCGGACGACGCCGGCCCACATGTATACGGACGGGGTGGAGTACTTCCCGGTCA
GCAAGTACGTCCTGTGGGGTTACCAGTTCAAGAGCGTCGCCGCGCTCGGTCCCATCCTGGGTCCGTACATCGCCATCCAA
TACGGCTGGGCCCCGGCGCTGGCGTGGATCATCCTGGGCAACTTCTTCATCGGCTGGCTCCAGGACTACGGCGCCATCAT
GCTCTCCATCCGCAACCAGGGACGCTCTTTCGGACCCATCACCTACGAGTTCACCGGCAACACCGGCCGAAACACCCTCC
TGGGCTTCATCCTGTTCTATCTCCTGATCATCTCCGCGACCTTCATCTACTTCATCGCCCTGTTCTGGCACACGTTCCCG
TCCACCTTTGCGGCCACCGTCGGCATCCTGCTGGTCGGCGTGCTGGCCGGACAGATGCTCTACAAGATGCGGGCCAACGT
GGTGACGGCCACGGCGCTGTCCATCGTCCTCATGGCCCTGGTCATCTGGGCCGCCGCCTCCTTCCCGTTCCTGCAGACGC
CCCAGGGCGCCTGGCCGCCGAACCCCGCCCAGGGCGTGGAGGCGGGCGGCATCGCCGGCCCGTGGTCCCTGCTGATCTGG
TGCATCGTCGCCTGCGTCGTCCTGTACCTCGCGTCGGTCCTGCCGCTGCCCACGTTCATCCAGCCGGTCAACTACGTCTC
CTTCTTCCCCACCTTCCTGGCGGTGATCCTGATCCTCATCGGCGCCCTCGTCTCCAACTTCACCGGCGTCCGGCTGGAGC
AGCCGGCCTGGATCGGCTTCAACCCCACCGGCAATAACCCGATGTGGCCACTGATGTTCGTGGCCATCGCCTGCGGCTCC
ATCTCGGGCTGGCACAGCCTGGTTTCCAGCTCTTCCACCGCCAAGCAGCTGGACATCGAGACCGACGCCCACCCGGTCGG
CGCCGGCGCCATGCTCTCCGAGGGGCTGCTGGCCCTGGCCTCCCTGGCCGCCTACATGATCATCCCGCGGGAGCAGCTCA
CCGGCAACGTGGGCTCCTGGGTGGCCGGCGCCATCAAGTTCACCGCCCCGTTCCTGGGAGGCGAGGCCGCGGTGGGCTTC
TTGCGGGCGTACTTCGGCGTGTGCCTCATCCTCTACGCCCTGACGGTACAGGCCCTGGTCACCCGCTTCTGGCGGCTGGT
CTCCACCGAGGTCTTCCAGGGCCGACTGGCCATCCTGGGCCAGAAGCACGTCGCCACCTTCATCGGCCTGCTGATCCCGC
TGGCCTTTGCGGCCACCGGCTCCTGGAACAACCTGTGGCTCTACTTCGGCGGCTCCAACCAGCTCCTCGCGGGCCTGGCG
CTGATGCTCATCACCATCCATCTCGCCCGCGTGCAGGCGCCCACGGTCTACACCCTGATCCCGGCGACCTTCATGATGGT
CACCACCATCACCGCCATCGGCTGGCAGGTGGTGAAGGTCTACCTCCCGGCCTTCCTGGGCACAACCCCCACGCTGGTGC
AGTACCCGTTCAACCAGTACCCGGGGTTCAGCCGGGCCATGGACGGCATCTTCGTCCTGGTGGGGGTCGCGCTCTTCGTC
CTGGGCCTGGTGATGGCCTACAAGACCTACTCGGCCTACGCCGAGGCCCGGCGGGGGCTGGGCTCCAGCCCGCGGGTCGC
CACCAGCGGGGATTAG

Upstream 100 bases:

>100_bases
GGGAGCCGTAGCGGAAAGGGGGGGTGCAGGGTCACCGGGAAAGAACGGCTTGCCCCAACGCGACAGGCGCCCAATCCAGT
GAGAGGAGGTTGATGGAAGG

Downstream 100 bases:

>100_bases
AACCTGACCGGGCTGCCCGGGCGTCCGCGGAGCCGCCCGGGCGGCCCCCATCACCGGAGGTGAAACGGGCTTGGCTGACA
AGAAGGAGCAGAAGAAGGGC

Product: carbon starvation-induced protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 591; Mature: 590

Protein sequence:

>591_residues
MSSPALFVLLALVAYGIAYFGYGKWFDRNVWKPDPKRTTPAHMYTDGVEYFPVSKYVLWGYQFKSVAALGPILGPYIAIQ
YGWAPALAWIILGNFFIGWLQDYGAIMLSIRNQGRSFGPITYEFTGNTGRNTLLGFILFYLLIISATFIYFIALFWHTFP
STFAATVGILLVGVLAGQMLYKMRANVVTATALSIVLMALVIWAAASFPFLQTPQGAWPPNPAQGVEAGGIAGPWSLLIW
CIVACVVLYLASVLPLPTFIQPVNYVSFFPTFLAVILILIGALVSNFTGVRLEQPAWIGFNPTGNNPMWPLMFVAIACGS
ISGWHSLVSSSSTAKQLDIETDAHPVGAGAMLSEGLLALASLAAYMIIPREQLTGNVGSWVAGAIKFTAPFLGGEAAVGF
LRAYFGVCLILYALTVQALVTRFWRLVSTEVFQGRLAILGQKHVATFIGLLIPLAFAATGSWNNLWLYFGGSNQLLAGLA
LMLITIHLARVQAPTVYTLIPATFMMVTTITAIGWQVVKVYLPAFLGTTPTLVQYPFNQYPGFSRAMDGIFVLVGVALFV
LGLVMAYKTYSAYAEARRGLGSSPRVATSGD

Sequences:

>Translated_591_residues
MSSPALFVLLALVAYGIAYFGYGKWFDRNVWKPDPKRTTPAHMYTDGVEYFPVSKYVLWGYQFKSVAALGPILGPYIAIQ
YGWAPALAWIILGNFFIGWLQDYGAIMLSIRNQGRSFGPITYEFTGNTGRNTLLGFILFYLLIISATFIYFIALFWHTFP
STFAATVGILLVGVLAGQMLYKMRANVVTATALSIVLMALVIWAAASFPFLQTPQGAWPPNPAQGVEAGGIAGPWSLLIW
CIVACVVLYLASVLPLPTFIQPVNYVSFFPTFLAVILILIGALVSNFTGVRLEQPAWIGFNPTGNNPMWPLMFVAIACGS
ISGWHSLVSSSSTAKQLDIETDAHPVGAGAMLSEGLLALASLAAYMIIPREQLTGNVGSWVAGAIKFTAPFLGGEAAVGF
LRAYFGVCLILYALTVQALVTRFWRLVSTEVFQGRLAILGQKHVATFIGLLIPLAFAATGSWNNLWLYFGGSNQLLAGLA
LMLITIHLARVQAPTVYTLIPATFMMVTTITAIGWQVVKVYLPAFLGTTPTLVQYPFNQYPGFSRAMDGIFVLVGVALFV
LGLVMAYKTYSAYAEARRGLGSSPRVATSGD
>Mature_590_residues
SSPALFVLLALVAYGIAYFGYGKWFDRNVWKPDPKRTTPAHMYTDGVEYFPVSKYVLWGYQFKSVAALGPILGPYIAIQY
GWAPALAWIILGNFFIGWLQDYGAIMLSIRNQGRSFGPITYEFTGNTGRNTLLGFILFYLLIISATFIYFIALFWHTFPS
TFAATVGILLVGVLAGQMLYKMRANVVTATALSIVLMALVIWAAASFPFLQTPQGAWPPNPAQGVEAGGIAGPWSLLIWC
IVACVVLYLASVLPLPTFIQPVNYVSFFPTFLAVILILIGALVSNFTGVRLEQPAWIGFNPTGNNPMWPLMFVAIACGSI
SGWHSLVSSSSTAKQLDIETDAHPVGAGAMLSEGLLALASLAAYMIIPREQLTGNVGSWVAGAIKFTAPFLGGEAAVGFL
RAYFGVCLILYALTVQALVTRFWRLVSTEVFQGRLAILGQKHVATFIGLLIPLAFAATGSWNNLWLYFGGSNQLLAGLAL
MLITIHLARVQAPTVYTLIPATFMMVTTITAIGWQVVKVYLPAFLGTTPTLVQYPFNQYPGFSRAMDGIFVLVGVALFVL
GLVMAYKTYSAYAEARRGLGSSPRVATSGD

Specific function: Peptide Utilization During Carbon Starvation. [C]

COG id: COG1966

COG function: function code T; Carbon starvation protein, predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CstA family [H]

Homologues:

Organism=Escherichia coli, GI1786814, Length=374, Percent_Identity=30.7486631016043, Blast_Score=148, Evalue=8e-37,
Organism=Escherichia coli, GI87082431, Length=379, Percent_Identity=30.6068601583113, Blast_Score=139, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003706 [H]

Pfam domain/function: PF02554 CstA [H]

EC number: NA

Molecular weight: Translated: 64115; Mature: 63984

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPALFVLLALVAYGIAYFGYGKWFDRNVWKPDPKRTTPAHMYTDGVEYFPVSKYVLWG
CCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHEEC
YQFKSVAALGPILGPYIAIQYGWAPALAWIILGNFFIGWLQDYGAIMLSIRNQGRSFGPI
HHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
TYEFTGNTGRNTLLGFILFYLLIISATFIYFIALFWHTFPSTFAATVGILLVGVLAGQML
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YKMRANVVTATALSIVLMALVIWAAASFPFLQTPQGAWPPNPAQGVEAGGIAGPWSLLIW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
CIVACVVLYLASVLPLPTFIQPVNYVSFFPTFLAVILILIGALVSNFTGVRLEQPAWIGF
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEEEC
NPTGNNPMWPLMFVAIACGSISGWHSLVSSSSTAKQLDIETDAHPVGAGAMLSEGLLALA
CCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHH
SLAAYMIIPREQLTGNVGSWVAGAIKFTAPFLGGEAAVGFLRAYFGVCLILYALTVQALV
HHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TRFWRLVSTEVFQGRLAILGQKHVATFIGLLIPLAFAATGSWNNLWLYFGGSNQLLAGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHH
LMLITIHLARVQAPTVYTLIPATFMMVTTITAIGWQVVKVYLPAFLGTTPTLVQYPFNQY
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCC
PGFSRAMDGIFVLVGVALFVLGLVMAYKTYSAYAEARRGLGSSPRVATSGD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SSPALFVLLALVAYGIAYFGYGKWFDRNVWKPDPKRTTPAHMYTDGVEYFPVSKYVLWG
CCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHEEC
YQFKSVAALGPILGPYIAIQYGWAPALAWIILGNFFIGWLQDYGAIMLSIRNQGRSFGPI
HHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
TYEFTGNTGRNTLLGFILFYLLIISATFIYFIALFWHTFPSTFAATVGILLVGVLAGQML
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YKMRANVVTATALSIVLMALVIWAAASFPFLQTPQGAWPPNPAQGVEAGGIAGPWSLLIW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
CIVACVVLYLASVLPLPTFIQPVNYVSFFPTFLAVILILIGALVSNFTGVRLEQPAWIGF
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEEEC
NPTGNNPMWPLMFVAIACGSISGWHSLVSSSSTAKQLDIETDAHPVGAGAMLSEGLLALA
CCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHH
SLAAYMIIPREQLTGNVGSWVAGAIKFTAPFLGGEAAVGFLRAYFGVCLILYALTVQALV
HHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TRFWRLVSTEVFQGRLAILGQKHVATFIGLLIPLAFAATGSWNNLWLYFGGSNQLLAGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHH
LMLITIHLARVQAPTVYTLIPATFMMVTTITAIGWQVVKVYLPAFLGTTPTLVQYPFNQY
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCC
PGFSRAMDGIFVLVGVALFVLGLVMAYKTYSAYAEARRGLGSSPRVATSGD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]