| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is cstA [H]
Identifier: 51891821
GI number: 51891821
Start: 751922
End: 753697
Strand: Reverse
Name: cstA [H]
Synonym: STH683
Alternate gene names: 51891821
Gene position: 753697-751922 (Counterclockwise)
Preceding gene: 51891824
Following gene: 51891820
Centisome position: 21.13
GC content: 66.33
Gene sequence:
>1776_bases ATGAGCTCACCGGCCCTGTTCGTTCTGCTTGCGCTGGTTGCCTATGGCATCGCGTACTTCGGGTACGGCAAGTGGTTCGA CCGGAACGTGTGGAAACCGGATCCCAAGCGGACGACGCCGGCCCACATGTATACGGACGGGGTGGAGTACTTCCCGGTCA GCAAGTACGTCCTGTGGGGTTACCAGTTCAAGAGCGTCGCCGCGCTCGGTCCCATCCTGGGTCCGTACATCGCCATCCAA TACGGCTGGGCCCCGGCGCTGGCGTGGATCATCCTGGGCAACTTCTTCATCGGCTGGCTCCAGGACTACGGCGCCATCAT GCTCTCCATCCGCAACCAGGGACGCTCTTTCGGACCCATCACCTACGAGTTCACCGGCAACACCGGCCGAAACACCCTCC TGGGCTTCATCCTGTTCTATCTCCTGATCATCTCCGCGACCTTCATCTACTTCATCGCCCTGTTCTGGCACACGTTCCCG TCCACCTTTGCGGCCACCGTCGGCATCCTGCTGGTCGGCGTGCTGGCCGGACAGATGCTCTACAAGATGCGGGCCAACGT GGTGACGGCCACGGCGCTGTCCATCGTCCTCATGGCCCTGGTCATCTGGGCCGCCGCCTCCTTCCCGTTCCTGCAGACGC CCCAGGGCGCCTGGCCGCCGAACCCCGCCCAGGGCGTGGAGGCGGGCGGCATCGCCGGCCCGTGGTCCCTGCTGATCTGG TGCATCGTCGCCTGCGTCGTCCTGTACCTCGCGTCGGTCCTGCCGCTGCCCACGTTCATCCAGCCGGTCAACTACGTCTC CTTCTTCCCCACCTTCCTGGCGGTGATCCTGATCCTCATCGGCGCCCTCGTCTCCAACTTCACCGGCGTCCGGCTGGAGC AGCCGGCCTGGATCGGCTTCAACCCCACCGGCAATAACCCGATGTGGCCACTGATGTTCGTGGCCATCGCCTGCGGCTCC ATCTCGGGCTGGCACAGCCTGGTTTCCAGCTCTTCCACCGCCAAGCAGCTGGACATCGAGACCGACGCCCACCCGGTCGG CGCCGGCGCCATGCTCTCCGAGGGGCTGCTGGCCCTGGCCTCCCTGGCCGCCTACATGATCATCCCGCGGGAGCAGCTCA CCGGCAACGTGGGCTCCTGGGTGGCCGGCGCCATCAAGTTCACCGCCCCGTTCCTGGGAGGCGAGGCCGCGGTGGGCTTC TTGCGGGCGTACTTCGGCGTGTGCCTCATCCTCTACGCCCTGACGGTACAGGCCCTGGTCACCCGCTTCTGGCGGCTGGT CTCCACCGAGGTCTTCCAGGGCCGACTGGCCATCCTGGGCCAGAAGCACGTCGCCACCTTCATCGGCCTGCTGATCCCGC TGGCCTTTGCGGCCACCGGCTCCTGGAACAACCTGTGGCTCTACTTCGGCGGCTCCAACCAGCTCCTCGCGGGCCTGGCG CTGATGCTCATCACCATCCATCTCGCCCGCGTGCAGGCGCCCACGGTCTACACCCTGATCCCGGCGACCTTCATGATGGT CACCACCATCACCGCCATCGGCTGGCAGGTGGTGAAGGTCTACCTCCCGGCCTTCCTGGGCACAACCCCCACGCTGGTGC AGTACCCGTTCAACCAGTACCCGGGGTTCAGCCGGGCCATGGACGGCATCTTCGTCCTGGTGGGGGTCGCGCTCTTCGTC CTGGGCCTGGTGATGGCCTACAAGACCTACTCGGCCTACGCCGAGGCCCGGCGGGGGCTGGGCTCCAGCCCGCGGGTCGC CACCAGCGGGGATTAG
Upstream 100 bases:
>100_bases GGGAGCCGTAGCGGAAAGGGGGGGTGCAGGGTCACCGGGAAAGAACGGCTTGCCCCAACGCGACAGGCGCCCAATCCAGT GAGAGGAGGTTGATGGAAGG
Downstream 100 bases:
>100_bases AACCTGACCGGGCTGCCCGGGCGTCCGCGGAGCCGCCCGGGCGGCCCCCATCACCGGAGGTGAAACGGGCTTGGCTGACA AGAAGGAGCAGAAGAAGGGC
Product: carbon starvation-induced protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 591; Mature: 590
Protein sequence:
>591_residues MSSPALFVLLALVAYGIAYFGYGKWFDRNVWKPDPKRTTPAHMYTDGVEYFPVSKYVLWGYQFKSVAALGPILGPYIAIQ YGWAPALAWIILGNFFIGWLQDYGAIMLSIRNQGRSFGPITYEFTGNTGRNTLLGFILFYLLIISATFIYFIALFWHTFP STFAATVGILLVGVLAGQMLYKMRANVVTATALSIVLMALVIWAAASFPFLQTPQGAWPPNPAQGVEAGGIAGPWSLLIW CIVACVVLYLASVLPLPTFIQPVNYVSFFPTFLAVILILIGALVSNFTGVRLEQPAWIGFNPTGNNPMWPLMFVAIACGS ISGWHSLVSSSSTAKQLDIETDAHPVGAGAMLSEGLLALASLAAYMIIPREQLTGNVGSWVAGAIKFTAPFLGGEAAVGF LRAYFGVCLILYALTVQALVTRFWRLVSTEVFQGRLAILGQKHVATFIGLLIPLAFAATGSWNNLWLYFGGSNQLLAGLA LMLITIHLARVQAPTVYTLIPATFMMVTTITAIGWQVVKVYLPAFLGTTPTLVQYPFNQYPGFSRAMDGIFVLVGVALFV LGLVMAYKTYSAYAEARRGLGSSPRVATSGD
Sequences:
>Translated_591_residues MSSPALFVLLALVAYGIAYFGYGKWFDRNVWKPDPKRTTPAHMYTDGVEYFPVSKYVLWGYQFKSVAALGPILGPYIAIQ YGWAPALAWIILGNFFIGWLQDYGAIMLSIRNQGRSFGPITYEFTGNTGRNTLLGFILFYLLIISATFIYFIALFWHTFP STFAATVGILLVGVLAGQMLYKMRANVVTATALSIVLMALVIWAAASFPFLQTPQGAWPPNPAQGVEAGGIAGPWSLLIW CIVACVVLYLASVLPLPTFIQPVNYVSFFPTFLAVILILIGALVSNFTGVRLEQPAWIGFNPTGNNPMWPLMFVAIACGS ISGWHSLVSSSSTAKQLDIETDAHPVGAGAMLSEGLLALASLAAYMIIPREQLTGNVGSWVAGAIKFTAPFLGGEAAVGF LRAYFGVCLILYALTVQALVTRFWRLVSTEVFQGRLAILGQKHVATFIGLLIPLAFAATGSWNNLWLYFGGSNQLLAGLA LMLITIHLARVQAPTVYTLIPATFMMVTTITAIGWQVVKVYLPAFLGTTPTLVQYPFNQYPGFSRAMDGIFVLVGVALFV LGLVMAYKTYSAYAEARRGLGSSPRVATSGD >Mature_590_residues SSPALFVLLALVAYGIAYFGYGKWFDRNVWKPDPKRTTPAHMYTDGVEYFPVSKYVLWGYQFKSVAALGPILGPYIAIQY GWAPALAWIILGNFFIGWLQDYGAIMLSIRNQGRSFGPITYEFTGNTGRNTLLGFILFYLLIISATFIYFIALFWHTFPS TFAATVGILLVGVLAGQMLYKMRANVVTATALSIVLMALVIWAAASFPFLQTPQGAWPPNPAQGVEAGGIAGPWSLLIWC IVACVVLYLASVLPLPTFIQPVNYVSFFPTFLAVILILIGALVSNFTGVRLEQPAWIGFNPTGNNPMWPLMFVAIACGSI SGWHSLVSSSSTAKQLDIETDAHPVGAGAMLSEGLLALASLAAYMIIPREQLTGNVGSWVAGAIKFTAPFLGGEAAVGFL RAYFGVCLILYALTVQALVTRFWRLVSTEVFQGRLAILGQKHVATFIGLLIPLAFAATGSWNNLWLYFGGSNQLLAGLAL MLITIHLARVQAPTVYTLIPATFMMVTTITAIGWQVVKVYLPAFLGTTPTLVQYPFNQYPGFSRAMDGIFVLVGVALFVL GLVMAYKTYSAYAEARRGLGSSPRVATSGD
Specific function: Peptide Utilization During Carbon Starvation. [C]
COG id: COG1966
COG function: function code T; Carbon starvation protein, predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CstA family [H]
Homologues:
Organism=Escherichia coli, GI1786814, Length=374, Percent_Identity=30.7486631016043, Blast_Score=148, Evalue=8e-37, Organism=Escherichia coli, GI87082431, Length=379, Percent_Identity=30.6068601583113, Blast_Score=139, Evalue=6e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003706 [H]
Pfam domain/function: PF02554 CstA [H]
EC number: NA
Molecular weight: Translated: 64115; Mature: 63984
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPALFVLLALVAYGIAYFGYGKWFDRNVWKPDPKRTTPAHMYTDGVEYFPVSKYVLWG CCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHEEC YQFKSVAALGPILGPYIAIQYGWAPALAWIILGNFFIGWLQDYGAIMLSIRNQGRSFGPI HHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE TYEFTGNTGRNTLLGFILFYLLIISATFIYFIALFWHTFPSTFAATVGILLVGVLAGQML EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YKMRANVVTATALSIVLMALVIWAAASFPFLQTPQGAWPPNPAQGVEAGGIAGPWSLLIW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH CIVACVVLYLASVLPLPTFIQPVNYVSFFPTFLAVILILIGALVSNFTGVRLEQPAWIGF HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEEEC NPTGNNPMWPLMFVAIACGSISGWHSLVSSSSTAKQLDIETDAHPVGAGAMLSEGLLALA CCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHH SLAAYMIIPREQLTGNVGSWVAGAIKFTAPFLGGEAAVGFLRAYFGVCLILYALTVQALV HHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH TRFWRLVSTEVFQGRLAILGQKHVATFIGLLIPLAFAATGSWNNLWLYFGGSNQLLAGLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHH LMLITIHLARVQAPTVYTLIPATFMMVTTITAIGWQVVKVYLPAFLGTTPTLVQYPFNQY HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCC PGFSRAMDGIFVLVGVALFVLGLVMAYKTYSAYAEARRGLGSSPRVATSGD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SSPALFVLLALVAYGIAYFGYGKWFDRNVWKPDPKRTTPAHMYTDGVEYFPVSKYVLWG CCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHEEC YQFKSVAALGPILGPYIAIQYGWAPALAWIILGNFFIGWLQDYGAIMLSIRNQGRSFGPI HHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE TYEFTGNTGRNTLLGFILFYLLIISATFIYFIALFWHTFPSTFAATVGILLVGVLAGQML EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YKMRANVVTATALSIVLMALVIWAAASFPFLQTPQGAWPPNPAQGVEAGGIAGPWSLLIW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH CIVACVVLYLASVLPLPTFIQPVNYVSFFPTFLAVILILIGALVSNFTGVRLEQPAWIGF HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEEEC NPTGNNPMWPLMFVAIACGSISGWHSLVSSSSTAKQLDIETDAHPVGAGAMLSEGLLALA CCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHH SLAAYMIIPREQLTGNVGSWVAGAIKFTAPFLGGEAAVGFLRAYFGVCLILYALTVQALV HHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH TRFWRLVSTEVFQGRLAILGQKHVATFIGLLIPLAFAATGSWNNLWLYFGGSNQLLAGLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHH LMLITIHLARVQAPTVYTLIPATFMMVTTITAIGWQVVKVYLPAFLGTTPTLVQYPFNQY HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCC PGFSRAMDGIFVLVGVALFVLGLVMAYKTYSAYAEARRGLGSSPRVATSGD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]