| Definition | Borrelia garinii PBi chromosome chromosome linear, complete sequence. |
|---|---|
| Accession | NC_006156 |
| Length | 904,246 |
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The map label for this gene is recJ [H]
Identifier: 51598514
GI number: 51598514
Start: 262784
End: 264910
Strand: Direct
Name: recJ [H]
Synonym: BG0257
Alternate gene names: 51598514
Gene position: 262784-264910 (Clockwise)
Preceding gene: 51598512
Following gene: 51598515
Centisome position: 29.06
GC content: 25.34
Gene sequence:
>2127_bases ATGAAAATTTGGAAACAAAAAGAAACTAATATACAAATCCAAGAATTAACTCGCATTGCTAAGCAATATAATATAAATCC CTTTGAAGCAACTTTGCTCATAAAGCGAGAAATTAAAGAAGAAGATTTCATATTTTTCCTTGAAGACAGCACAAATTTAC TACACAATCCATTCTTATTAAAAGATATAGATAAATTTATAAACAGAATCAATAAAGCAATTAAAGAGAATGAAAACATA TTAATCTTTGGAGATAAAGATGCTGATGGAATCACAGCAACAATAATAATGTATGAGACTCTTAAAGATTTTGGACTTAA TGTAAGTTATAAAATACCTTCAAATGGAGAATTTTATGGACTTTCAAAAGAATTAATCAACATAGCTTTAGAAAAAAAAA TCTCTTTAATAATAACCGTTGATAATGGTATCTCTAGTATTGAAGAAATAAATTATGCAAATTCAAAAGGAATAGAAATA ATAATCACAGATCACCATCTTCCAAGCGAAGATTTTAAAACTGAAAGCATAGTTATAAATCCTCACCTAAAAGATGATAA ATATCCATTCAAAGAAATAGCAGGATGTTGCGTAAGTTTTAAAACTTGCCTTGCTCTTAGCATGTCCTTTACAGATCTTT ATTCTAAAAACCTTGTATTTTTATTTTTAGAAAAAACAAATAATGAAATTATTCTTAATGCAATAGAAATAAAAAACTAT ATTTTAAAACAATATCTAAGATTAAATAACAAAAATGACCCTTCAATTAACTTAAACAAACTAGAAAAATTTATACAAAA CAAATACATAGTAATCTTTAACAAAGAAGATCAAGGTCAATTATTAAATAAACACTTCGGGATAAGCATAAATATTAACA CAATTGATATTAGTGAAAATTTTATAAAAAAATACCCAAATTTCAGAAAAAAAACATTAAAAGACTTAATCCAAGCAACT AAATATTTTAGATATAAAGAAGTTGAGATTAAAGACAAGCTTTACTACATATTTTACAACATAATTTTTGAAACTAACAA AAATTTGCTCCAAAGATGTCTAAAAAGACTTAGCTTTGTTGCAATAGGAACAATAGCAGACAATATGCCCATTATCAATG AAAATAGAATAATCCTAAAAGCAGGGCTTAAAGAAATTGCACTAAGAGAAAGAATGTCTATTAATTATCTATTAAAAGAT GCAAACATATTAACAAAACCAAATATAACTTCAATGGATATCGCATATAAAATTGCACCAATACTAAACTCAACAGGAAG ACTTGAAAAAGCAGATATTGCAATAAACTTTTTACTAGCTGACGACATTAATCAAATAGAAAATAAATTTAAAGAAATAA AAGAAATCAACGAACTAAGAAAATATAAAGAAGAAAAAGCTTGGAATTCTCATAATAAAAATACTATTTTTAAAAATGAT AAATTCATAGTTTGTTATGATAAAAACACCCCAAAAGGAATAAGTTCAAGACTTGCAACTAGACTTTCTGCTTACTACCA AAAAGTTGCTATTTTTTTAACAAAACAAGATAATATTATTAAAGGATCAATTAGGTCAAACAATAAAATCAATTCAAAAG CATTAATATCGACAATACCTTCTCATTTAATAATAAATTCAGGGGGACATAAAGCTGCCGCTGGATTTACGCTGAATGAA AATTTACTCGAAGACTTTATTAAAGAATTAGAATATGCAACTACAAAAGTTAAATATGAAACTACTGATGAAAACGAGTC AATATTAATAGATACTATTGTTCCAAAGAATTTAACAAAAGATTCTCTTTTTAAAACAATAGAAATATTTGAACCTTATG GCTATGAATTTAGAGAGCCAATATTAATGATGGAAAATGTTTACCTTCAAGAACTCAAAACAATTGACAAAAATCATAAC TCAAAACATATAAATATGCGCATTAAATCACAAAACGACTACTATAAAGCTATTTTTTTTAACGGAACAAAAAAAATAGA AGAATTAAATATAAAAGAAAATCAATATTTAGACATCATTTTTACAATTAATGAAGATTTTTACTGCCCGAGAGAAAAAA TTTTGAAAATCATAGACATAAAAAAGAGCGCTCAAATCAATGTATAG
Upstream 100 bases:
>100_bases TAAACATAATGCCCACTACTTAAAATTAATTAATCTATGGTGAAGTTAGTAAAGAAGAATCCTTGAAAAATCGATTAAAA AATAAATTCTAGAGAAGTAA
Downstream 100 bases:
>100_bases AATACAAAAAACCTTACTTATATTTTGTATTCTAGGAATAGAAAATATAAATTCAGAAATAATAAATACTATTCCTAAAG TCCAATATAAAAAAGAAGCA
Product: single-stranded-DNA-specific exonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 708; Mature: 708
Protein sequence:
>708_residues MKIWKQKETNIQIQELTRIAKQYNINPFEATLLIKREIKEEDFIFFLEDSTNLLHNPFLLKDIDKFINRINKAIKENENI LIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEFYGLSKELINIALEKKISLIITVDNGISSIEEINYANSKGIEI IITDHHLPSEDFKTESIVINPHLKDDKYPFKEIAGCCVSFKTCLALSMSFTDLYSKNLVFLFLEKTNNEIILNAIEIKNY ILKQYLRLNNKNDPSINLNKLEKFIQNKYIVIFNKEDQGQLLNKHFGISININTIDISENFIKKYPNFRKKTLKDLIQAT KYFRYKEVEIKDKLYYIFYNIIFETNKNLLQRCLKRLSFVAIGTIADNMPIINENRIILKAGLKEIALRERMSINYLLKD ANILTKPNITSMDIAYKIAPILNSTGRLEKADIAINFLLADDINQIENKFKEIKEINELRKYKEEKAWNSHNKNTIFKND KFIVCYDKNTPKGISSRLATRLSAYYQKVAIFLTKQDNIIKGSIRSNNKINSKALISTIPSHLIINSGGHKAAAGFTLNE NLLEDFIKELEYATTKVKYETTDENESILIDTIVPKNLTKDSLFKTIEIFEPYGYEFREPILMMENVYLQELKTIDKNHN SKHINMRIKSQNDYYKAIFFNGTKKIEELNIKENQYLDIIFTINEDFYCPREKILKIIDIKKSAQINV
Sequences:
>Translated_708_residues MKIWKQKETNIQIQELTRIAKQYNINPFEATLLIKREIKEEDFIFFLEDSTNLLHNPFLLKDIDKFINRINKAIKENENI LIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEFYGLSKELINIALEKKISLIITVDNGISSIEEINYANSKGIEI IITDHHLPSEDFKTESIVINPHLKDDKYPFKEIAGCCVSFKTCLALSMSFTDLYSKNLVFLFLEKTNNEIILNAIEIKNY ILKQYLRLNNKNDPSINLNKLEKFIQNKYIVIFNKEDQGQLLNKHFGISININTIDISENFIKKYPNFRKKTLKDLIQAT KYFRYKEVEIKDKLYYIFYNIIFETNKNLLQRCLKRLSFVAIGTIADNMPIINENRIILKAGLKEIALRERMSINYLLKD ANILTKPNITSMDIAYKIAPILNSTGRLEKADIAINFLLADDINQIENKFKEIKEINELRKYKEEKAWNSHNKNTIFKND KFIVCYDKNTPKGISSRLATRLSAYYQKVAIFLTKQDNIIKGSIRSNNKINSKALISTIPSHLIINSGGHKAAAGFTLNE NLLEDFIKELEYATTKVKYETTDENESILIDTIVPKNLTKDSLFKTIEIFEPYGYEFREPILMMENVYLQELKTIDKNHN SKHINMRIKSQNDYYKAIFFNGTKKIEELNIKENQYLDIIFTINEDFYCPREKILKIIDIKKSAQINV >Mature_708_residues MKIWKQKETNIQIQELTRIAKQYNINPFEATLLIKREIKEEDFIFFLEDSTNLLHNPFLLKDIDKFINRINKAIKENENI LIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEFYGLSKELINIALEKKISLIITVDNGISSIEEINYANSKGIEI IITDHHLPSEDFKTESIVINPHLKDDKYPFKEIAGCCVSFKTCLALSMSFTDLYSKNLVFLFLEKTNNEIILNAIEIKNY ILKQYLRLNNKNDPSINLNKLEKFIQNKYIVIFNKEDQGQLLNKHFGISININTIDISENFIKKYPNFRKKTLKDLIQAT KYFRYKEVEIKDKLYYIFYNIIFETNKNLLQRCLKRLSFVAIGTIADNMPIINENRIILKAGLKEIALRERMSINYLLKD ANILTKPNITSMDIAYKIAPILNSTGRLEKADIAINFLLADDINQIENKFKEIKEINELRKYKEEKAWNSHNKNTIFKND KFIVCYDKNTPKGISSRLATRLSAYYQKVAIFLTKQDNIIKGSIRSNNKINSKALISTIPSHLIINSGGHKAAAGFTLNE NLLEDFIKELEYATTKVKYETTDENESILIDTIVPKNLTKDSLFKTIEIFEPYGYEFREPILMMENVYLQELKTIDKNHN SKHINMRIKSQNDYYKAIFFNGTKKIEELNIKENQYLDIIFTINEDFYCPREKILKIIDIKKSAQINV
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=155, Percent_Identity=38.7096774193548, Blast_Score=119, Evalue=7e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 82510; Mature: 82510
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIWKQKETNIQIQELTRIAKQYNINPFEATLLIKREIKEEDFIFFLEDSTNLLHNPFLL CCCCCCCCCCEEHHHHHHHHHHCCCCCHHEEEEEEECCCCCCEEEEEECCCCHHCCCHHH KDIDKFINRINKAIKENENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEFYG HHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEHHHHHCCEEEEECCCCCCEEE LSKELINIALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPSEDFKTESIVIN CHHHHHHHHHCCEEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEC PHLKDDKYPFKEIAGCCVSFKTCLALSMSFTDLYSKNLVFLFLEKTNNEIILNAIEIKNY CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEHHHHHHH ILKQYLRLNNKNDPSINLNKLEKFIQNKYIVIFNKEDQGQLLNKHFGISININTIDISEN HHHHHHHCCCCCCCCEEHHHHHHHHCCCEEEEECCCCCCHHHHHCCCEEEEEEEEECCHH FIKKYPNFRKKTLKDLIQATKYFRYKEVEIKDKLYYIFYNIIFETNKNLLQRCLKRLSFV HHHHCCCHHHHHHHHHHHHHHHHEEEEEEHHHHEEEEEEEEHHHCCHHHHHHHHHHHHEE AIGTIADNMPIINENRIILKAGLKEIALRERMSINYLLKDANILTKPNITSMDIAYKIAP EEEEECCCCCEECCCEEEEECCHHHHHHHHHCCEEEEEECCCEEECCCCCEEHHHEEEEH ILNSTGRLEKADIAINFLLADDINQIENKFKEIKEINELRKYKEEKAWNSHNKNTIFKND HHCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC KFIVCYDKNTPKGISSRLATRLSAYYQKVAIFLTKQDNIIKGSIRSNNKINSKALISTIP CEEEEECCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCEEECCCCCCCCCCCHHHHHHCC SHLIINSGGHKAAAGFTLNENLLEDFIKELEYATTKVKYETTDENESILIDTIVPKNLTK CCEEEECCCCCEEECCEECHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEEEECCCCCCH DSLFKTIEIFEPYGYEFREPILMMENVYLQELKTIDKNHNSKHINMRIKSQNDYYKAIFF HHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEE NGTKKIEELNIKENQYLDIIFTINEDFYCPREKILKIIDIKKSAQINV CCCCCCEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKIWKQKETNIQIQELTRIAKQYNINPFEATLLIKREIKEEDFIFFLEDSTNLLHNPFLL CCCCCCCCCCEEHHHHHHHHHHCCCCCHHEEEEEEECCCCCCEEEEEECCCCHHCCCHHH KDIDKFINRINKAIKENENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEFYG HHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEHHHHHCCEEEEECCCCCCEEE LSKELINIALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPSEDFKTESIVIN CHHHHHHHHHCCEEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEC PHLKDDKYPFKEIAGCCVSFKTCLALSMSFTDLYSKNLVFLFLEKTNNEIILNAIEIKNY CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEHHHHHHH ILKQYLRLNNKNDPSINLNKLEKFIQNKYIVIFNKEDQGQLLNKHFGISININTIDISEN HHHHHHHCCCCCCCCEEHHHHHHHHCCCEEEEECCCCCCHHHHHCCCEEEEEEEEECCHH FIKKYPNFRKKTLKDLIQATKYFRYKEVEIKDKLYYIFYNIIFETNKNLLQRCLKRLSFV HHHHCCCHHHHHHHHHHHHHHHHEEEEEEHHHHEEEEEEEEHHHCCHHHHHHHHHHHHEE AIGTIADNMPIINENRIILKAGLKEIALRERMSINYLLKDANILTKPNITSMDIAYKIAP EEEEECCCCCEECCCEEEEECCHHHHHHHHHCCEEEEEECCCEEECCCCCEEHHHEEEEH ILNSTGRLEKADIAINFLLADDINQIENKFKEIKEINELRKYKEEKAWNSHNKNTIFKND HHCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC KFIVCYDKNTPKGISSRLATRLSAYYQKVAIFLTKQDNIIKGSIRSNNKINSKALISTIP CEEEEECCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCEEECCCCCCCCCCCHHHHHHCC SHLIINSGGHKAAAGFTLNENLLEDFIKELEYATTKVKYETTDENESILIDTIVPKNLTK CCEEEECCCCCEEECCEECHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEEEECCCCCCH DSLFKTIEIFEPYGYEFREPILMMENVYLQELKTIDKNHNSKHINMRIKSQNDYYKAIFF HHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEE NGTKKIEELNIKENQYLDIIFTINEDFYCPREKILKIIDIKKSAQINV CCCCCCEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]