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The map label for this gene is csrA [H]

Identifier: 51598445

GI number: 51598445

Start: 186542

End: 186787

Strand: Direct

Name: csrA [H]

Synonym: BG0183

Alternate gene names: 51598445

Gene position: 186542-186787 (Clockwise)

Preceding gene: 51598444

Following gene: 51598453

Centisome position: 20.63

GC content: 17.48

Gene sequence:

>246_bases
ATGCTAGTATTATCAAGAAAAGTAAATGAAAGTATTAAAATAAACTCTGATATTGAAGTTTTAATATTAGAAATAAAAAA
GGATACTGTTAAAATAGCAATTAAGGCTCCTGAAAACATTAAAATATTTAGATCTGAAATTTATAAATTTATTATAGAAG
AAAATAAAAAATCAATACTAAAAGATAAACACAATATAAGTAAAATTAAAAGTTTATTCAATCATTATTTTAAGAATGAA
AATTAA

Upstream 100 bases:

>100_bases
AAGCACCAATCATAATAAACAAAAAAAAATTACTTGGAAAACAAGCTATATGCACAAATGAAAAATACTCCCTACACCAT
AAAGTTTTCAAGGAATAAAG

Downstream 100 bases:

>100_bases
TCTCTGCATCACTTTGCCTTATGTAAAGAGGCCCTGATAAAATATCATCACTTTTCCGATTTTTTAAATATTTAGCTATC
CCAAGTTCTGTTAAAATTCT

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MLVLSRKVNESIKINSDIEVLILEIKKDTVKIAIKAPENIKIFRSEIYKFIIEENKKSILKDKHNISKIKSLFNHYFKNE
N

Sequences:

>Translated_81_residues
MLVLSRKVNESIKINSDIEVLILEIKKDTVKIAIKAPENIKIFRSEIYKFIIEENKKSILKDKHNISKIKSLFNHYFKNE
N
>Mature_81_residues
MLVLSRKVNESIKINSDIEVLILEIKKDTVKIAIKAPENIKIFRSEIYKFIIEENKKSILKDKHNISKIKSLFNHYFKNE
N

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 9587; Mature: 9587

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLSRKVNESIKINSDIEVLILEIKKDTVKIAIKAPENIKIFRSEIYKFIIEENKKSIL
CEEECCCCCCCEEECCCEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHCCHHHHH
KDKHNISKIKSLFNHYFKNEN
HCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLVLSRKVNESIKINSDIEVLILEIKKDTVKIAIKAPENIKIFRSEIYKFIIEENKKSIL
CEEECCCCCCCEEECCCEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHCCHHHHH
KDKHNISKIKSLFNHYFKNEN
HCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA