| Definition | Borrelia garinii PBi chromosome chromosome linear, complete sequence. |
|---|---|
| Accession | NC_006156 |
| Length | 904,246 |
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The map label for this gene is nagA [H]
Identifier: 51598411
GI number: 51598411
Start: 150550
End: 151755
Strand: Direct
Name: nagA [H]
Synonym: BG0149
Alternate gene names: 51598411
Gene position: 150550-151755 (Clockwise)
Preceding gene: 51598400
Following gene: 51598412
Centisome position: 16.65
GC content: 34.25
Gene sequence:
>1206_bases ATGCCAAATTTTTGCTTATTCAACTCAAAATCCGTTTTAACTGGAAACGACAAACTAGATAATTCAGCGGTCCTTATTAA AGATAATGAAATTTTTGATATTGTAACATCTGATAGACTTAAAAAAATGGATCTCAGGGAATATCAAATGATTGATGCAA AATGCAACTATATAACTCCTGGACTTTACGACAGCCATATTCATGGATTTCACGGTTATGGGACAGACCAGTGCTCAACA GAATCAATACTTAAAATGTCAGAGCATTTGGCACAATACGGTGTCGTAGGATTTTTACCAACTCTTTATCCAAGACCAAT AGATGAAATGATTCAAACAATAAAAGCTTGTACAGCAGCAATTGGCAAGGAAAAGGGTGCTAAAATTTTAGGACTTCACC TTGAAGGGCCATTTTTCTCCCCTGAAAAAAGAGGCGCACACCCTGTTTCTTATCTTCACGAACCGAGCATTAAAGTTATG CAAAAACTAATAGATGCAGCTGGTGGAATATTTACAGGATCAAACGGCCAAAAAAAAACACATATAAGCACAATGACTGT TGCTCCCGAGCTTAAAGGAATGAGAGAACTTGCAATGTTTTGCCTTGAAAACAATATAAACCTTCAAGCAGGACACACAA ACGCAACATATGAAAATATGATCGAAGGATTTCAAGTTGGAATACTTCATACGACCCATTTTTTCAACGCAATGTCAAAA CTTGACCACAGAAATCCAAATGCAATAGGAGCAGTATTAATACATGGTGATGTTTCTTGTGAAATTATTGCAGATGGTCA TCATATACACCCAAAATTAGTTTTAATGATGAGAAAGCTTAAAGATATAAGTAAAATAGTCCTTGTAACTGACGGACTTA CTCCAAATTTTCAAACTTCTGGAAAACTAATTGCAAACGGAGATGAAGTTTATATTGCAGAGGATGGCTTATTCCACAGT GTGAAAAGCAACACAATAGCTGGATCAACGCTTACAATGATACAAGGTCTTAAAAATTTAGTAGAATTCGGCTACAGTTT AAGTGATGCTGTTCAAGCAAGCTCTTACAATCCAACAAGAATTCTTAATATTGATAAAAAGGGATTAATATGCCATGGAT ATGATGCAAACATCAATGTCTTAGATAAAGATTTCAATTTAAAATTAACAATGATAGAATCTAAAATAATTTTTAACAAT CTCTAA
Upstream 100 bases:
>100_bases CTTTAAGCATCAAAGAGCTTAAAAATAGAAAAATATAAAAAAGCAAAAACTTTAAAAAAGGTTAATGTTTATAGTAAAAT AAATTAAAAGGAATATGAAA
Downstream 100 bases:
>100_bases CTTTAACCCATTTTAAGGAGATCGCAATGAGATTAATAATCAGACCTACTTATGAAGACATATCGAAGTGGGCAGCCAAT CACGTAGCACAAAAAATTAA
Product: N-acetylglucosamine-6-phosphate deacetylase
Products: NA
Alternate protein names: GlcNAc 6-P deacetylase [H]
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MPNFCLFNSKSVLTGNDKLDNSAVLIKDNEIFDIVTSDRLKKMDLREYQMIDAKCNYITPGLYDSHIHGFHGYGTDQCST ESILKMSEHLAQYGVVGFLPTLYPRPIDEMIQTIKACTAAIGKEKGAKILGLHLEGPFFSPEKRGAHPVSYLHEPSIKVM QKLIDAAGGIFTGSNGQKKTHISTMTVAPELKGMRELAMFCLENNINLQAGHTNATYENMIEGFQVGILHTTHFFNAMSK LDHRNPNAIGAVLIHGDVSCEIIADGHHIHPKLVLMMRKLKDISKIVLVTDGLTPNFQTSGKLIANGDEVYIAEDGLFHS VKSNTIAGSTLTMIQGLKNLVEFGYSLSDAVQASSYNPTRILNIDKKGLICHGYDANINVLDKDFNLKLTMIESKIIFNN L
Sequences:
>Translated_401_residues MPNFCLFNSKSVLTGNDKLDNSAVLIKDNEIFDIVTSDRLKKMDLREYQMIDAKCNYITPGLYDSHIHGFHGYGTDQCST ESILKMSEHLAQYGVVGFLPTLYPRPIDEMIQTIKACTAAIGKEKGAKILGLHLEGPFFSPEKRGAHPVSYLHEPSIKVM QKLIDAAGGIFTGSNGQKKTHISTMTVAPELKGMRELAMFCLENNINLQAGHTNATYENMIEGFQVGILHTTHFFNAMSK LDHRNPNAIGAVLIHGDVSCEIIADGHHIHPKLVLMMRKLKDISKIVLVTDGLTPNFQTSGKLIANGDEVYIAEDGLFHS VKSNTIAGSTLTMIQGLKNLVEFGYSLSDAVQASSYNPTRILNIDKKGLICHGYDANINVLDKDFNLKLTMIESKIIFNN L >Mature_400_residues PNFCLFNSKSVLTGNDKLDNSAVLIKDNEIFDIVTSDRLKKMDLREYQMIDAKCNYITPGLYDSHIHGFHGYGTDQCSTE SILKMSEHLAQYGVVGFLPTLYPRPIDEMIQTIKACTAAIGKEKGAKILGLHLEGPFFSPEKRGAHPVSYLHEPSIKVMQ KLIDAAGGIFTGSNGQKKTHISTMTVAPELKGMRELAMFCLENNINLQAGHTNATYENMIEGFQVGILHTTHFFNAMSKL DHRNPNAIGAVLIHGDVSCEIIADGHHIHPKLVLMMRKLKDISKIVLVTDGLTPNFQTSGKLIANGDEVYIAEDGLFHSV KSNTIAGSTLTMIQGLKNLVEFGYSLSDAVQASSYNPTRILNIDKKGLICHGYDANINVLDKDFNLKLTMIESKIIFNNL
Specific function: N-acetylglucosamine utilization. [C]
COG id: COG1820
COG function: function code G; N-acetylglucosamine-6-phosphate deacetylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nagA family [H]
Homologues:
Organism=Homo sapiens, GI21361513, Length=442, Percent_Identity=26.0180995475113, Blast_Score=123, Evalue=3e-28, Organism=Homo sapiens, GI224922791, Length=440, Percent_Identity=26.1363636363636, Blast_Score=121, Evalue=1e-27, Organism=Escherichia coli, GI1786892, Length=387, Percent_Identity=28.9405684754522, Blast_Score=154, Evalue=1e-38, Organism=Caenorhabditis elegans, GI17553768, Length=370, Percent_Identity=26.4864864864865, Blast_Score=108, Evalue=6e-24, Organism=Drosophila melanogaster, GI19920392, Length=364, Percent_Identity=29.6703296703297, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI281361140, Length=372, Percent_Identity=28.494623655914, Blast_Score=113, Evalue=3e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 - InterPro: IPR003764 - InterPro: IPR011059 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: =3.5.1.25 [H]
Molecular weight: Translated: 44300; Mature: 44169
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNFCLFNSKSVLTGNDKLDNSAVLIKDNEIFDIVTSDRLKKMDLREYQMIDAKCNYITP CCCEEEECCCEEEECCCCCCCCEEEEECCCEEEEECCCHHHHCCCHHHHEECCCCCEECC GLYDSHIHGFHGYGTDQCSTESILKMSEHLAQYGVVGFLPTLYPRPIDEMIQTIKACTAA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHH IGKEKGAKILGLHLEGPFFSPEKRGAHPVSYLHEPSIKVMQKLIDAAGGIFTGSNGQKKT HCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCEEECCCCCCEE HISTMTVAPELKGMRELAMFCLENNINLQAGHTNATYENMIEGFQVGILHTTHFFNAMSK EEEEEEECHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHCHHEEEEEHHHHHHHHHHH LDHRNPNAIGAVLIHGDVSCEIIADGHHIHPKLVLMMRKLKDISKIVLVTDGLTPNFQTS HCCCCCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCCC GKLIANGDEVYIAEDGLFHSVKSNTIAGSTLTMIQGLKNLVEFGYSLSDAVQASSYNPTR CEEEECCCEEEEECCCCEEHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEE ILNIDKKGLICHGYDANINVLDKDFNLKLTMIESKIIFNNL EEEECCCCCEEECCCCCCEEEECCCCEEEEEEEEEEHCCCC >Mature Secondary Structure PNFCLFNSKSVLTGNDKLDNSAVLIKDNEIFDIVTSDRLKKMDLREYQMIDAKCNYITP CCEEEECCCEEEECCCCCCCCEEEEECCCEEEEECCCHHHHCCCHHHHEECCCCCEECC GLYDSHIHGFHGYGTDQCSTESILKMSEHLAQYGVVGFLPTLYPRPIDEMIQTIKACTAA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHH IGKEKGAKILGLHLEGPFFSPEKRGAHPVSYLHEPSIKVMQKLIDAAGGIFTGSNGQKKT HCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCEEECCCCCCEE HISTMTVAPELKGMRELAMFCLENNINLQAGHTNATYENMIEGFQVGILHTTHFFNAMSK EEEEEEECHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHCHHEEEEEHHHHHHHHHHH LDHRNPNAIGAVLIHGDVSCEIIADGHHIHPKLVLMMRKLKDISKIVLVTDGLTPNFQTS HCCCCCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCCC GKLIANGDEVYIAEDGLFHSVKSNTIAGSTLTMIQGLKNLVEFGYSLSDAVQASSYNPTR CEEEECCCEEEEECCCCEEHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEE ILNIDKKGLICHGYDANINVLDKDFNLKLTMIESKIIFNNL EEEECCCCCEEECCCCCCEEEECCCCEEEEEEEEEEHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA