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The map label for this gene is rnk

Identifier: 51597830

GI number: 51597830

Start: 4205423

End: 4205833

Strand: Direct

Name: rnk

Synonym: YPTB3538

Alternate gene names: 51597830

Gene position: 4205423-4205833 (Clockwise)

Preceding gene: 51597829

Following gene: 51597833

Centisome position: 88.63

GC content: 50.12

Gene sequence:

>411_bases
ATGACCAAGCCAACCATCACGATTAACGAGCTGGATGCTGAGCGTTTGGATGCGTTGCTAGCGCAACCGGCTTTTGCCGG
TTCTGTGGTCGCAACAGCGCTCAATGAAGAACTGGATCGGGCAGAAATTTTGCCACCTAATGAGATTCCCGCGGATGTGG
TGACCATGAACAGCCGCGTGCGTTTTCTTGATCTGAATAGCCAAGAAGAACATATTCGGACACTGGTTTATCCAGCATCA
TTAAAAGACAGTAATGAACAACTTTCAGTCATGGCTCCACTGGGCGCAGCACTGCTGGGCCTGCACGTCAATGATGAGAT
CAGTTGGAAATTACCTGGTGGGGATGAAACCCGCATTACCGTACTGGAACTGCTGTATCAGCCAGAATCAGCGGGCGAAT
ATCACCGCTAA

Upstream 100 bases:

>100_bases
CCTAATATCAGATTAACATTAAGCTATTTTCTAACACCCCCTCTCCTATGGCGTGGGGGTGTTGTTTTTATGTTTTGCTG
AAATTGAATTGGAGAGTGCT

Downstream 100 bases:

>100_bases
TACGTGATGCAGAGATGCAGAGATGCAGTGTCAGGTAAAAAGGTAATAAAGGGTAATAAAGGGTAATAAAGGGTAATAGA
AGATAATAGAGGGTAACCGC

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MTKPTITINELDAERLDALLAQPAFAGSVVATALNEELDRAEILPPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPAS
LKDSNEQLSVMAPLGAALLGLHVNDEISWKLPGGDETRITVLELLYQPESAGEYHR

Sequences:

>Translated_136_residues
MTKPTITINELDAERLDALLAQPAFAGSVVATALNEELDRAEILPPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPAS
LKDSNEQLSVMAPLGAALLGLHVNDEISWKLPGGDETRITVLELLYQPESAGEYHR
>Mature_135_residues
TKPTITINELDAERLDALLAQPAFAGSVVATALNEELDRAEILPPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPASL
KDSNEQLSVMAPLGAALLGLHVNDEISWKLPGGDETRITVLELLYQPESAGEYHR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=134, Percent_Identity=64.9253731343284, Blast_Score=179, Evalue=8e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14975; Mature: 14844

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPTITINELDAERLDALLAQPAFAGSVVATALNEELDRAEILPPNEIPADVVTMNSRV
CCCCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEE
RFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGLHVNDEISWKLPGGDETRIT
EEEECCCCHHHEEEEEECCCCCCCCCEEEEECCCCHHHEEEEECCCEEEEECCCCCCCEE
VLELLYQPESAGEYHR
EHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TKPTITINELDAERLDALLAQPAFAGSVVATALNEELDRAEILPPNEIPADVVTMNSRV
CCCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEE
RFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGLHVNDEISWKLPGGDETRIT
EEEECCCCHHHEEEEEECCCCCCCCCEEEEECCCCHHHEEEEECCCEEEEECCCCCCCEE
VLELLYQPESAGEYHR
EHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]