Click here to switch to the map view.

The map label for this gene is yggR [H]

Identifier: 51597522

GI number: 51597522

Start: 3777406

End: 3778530

Strand: Reverse

Name: yggR [H]

Synonym: YPTB3212

Alternate gene names: 51597522

Gene position: 3778530-3777406 (Counterclockwise)

Preceding gene: 51597529

Following gene: 51597512

Centisome position: 79.64

GC content: 47.73

Gene sequence:

>1125_bases
ATGGATTTCACAAGCCTGAATAATCAACATTCAGATCTGAATAACCCCGTGTTTAGCCGTATAAAAGCCAAACGCATTGA
TTTAGAAAACCCTGACCTTGCCAGTGATGGCTTTAACAAACAGGATTTTGCCAATAAGGTGGCGGCTAGTGTAGATCATA
ATGCTTCAGATCTGCACCTCTGTACCGGTTTTCACCCCGTATTACGTATCGATGGCGAGCTAAAAACCTTTACTGACTGG
CCGAAGGTCACTGCTGGTTGGTTAAATGGGCTACGTCGGCATATGTTGAGTGACGCACAAGAAAGCCGATTACAGCAACA
GGGGCAGGTTGACTGTGCCTATACCACCGTGGGCAGTCAAAGGTTACGGGCGAATATTTTCCAGCAACGACAGGGCCAAT
CCATTGCTTTTCGCATTATTCCTGCTATTTGTCCGTCACTGACACAATTGGCGGCACCACCTATTTTGAACCAATTGATT
CAACAGGATAATGGACTAATTCTGGTAACGGGGGCGACGGGCAGCGGTAAATCGACGACGCTGAGTGCCATGATAAGCGC
GATTAATCAGCAACAGGCACGACATATTATTACCCTTGAGGACCCGATTGAATTTATTCATAGCAGTCAATCATGTTTGA
TCCAGCAACGAGAGCTTGGTCGCCATACTCACTGTTTTAGTCGTGCCCTGAATGGGGCATTACGTCAGGATCCAGATATT
ATTTTACTCGGAGAGTTACGGGATCTGGAGACTATCCGATTAGCGCTGACAGCAGCAGAAACCGGGCATCTGGTGCTAGC
CACATTGCATACCCGCACGGCAACACAGGCTATTGATCGGCTGATTGATGTTTTTCCTCCTGAGGAGAAAGCCGTTATAC
GGACGCAACTGGCTGCCAGTTTACGCGGTGTTATCACGCAGAAATTGTGTCGTCAAAATGGCGGTGGGCGTATAGCTGTA
TTTGAGATACTCACGCAAACCACGGCAGTCAGCCATTTGATCCGAGAAGGTAAAACCTATCAATTACCAACCGTGATACA
GGCCGGAGGGCAATGGGGGATGCAAACCTTTGAGCAAAGTATCGCACAACGGCAAAAACAGGGGGTTTTGGCTATCAATC
ACTGA

Upstream 100 bases:

>100_bases
TTCTGGAGAGCGCCCGCAATTGTGTGCAGCCGTTGCGATCCGCGCTCTGACATCCTGTAGATTCTGTTGGATAGTACTCA
TATGGACCCAGGAGTTGGAT

Downstream 100 bases:

>100_bases
TGGGGGAGGCACCGCTGACACTGTAGTTATTTCAAGGGAGAAGGTGATGCAATAAATTAACCCGGATCGGATGATCCGGG
TCAAGCAGGCGGCTTATTTT

Product: MTB family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MDFTSLNNQHSDLNNPVFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHLCTGFHPVLRIDGELKTFTDW
PKVTAGWLNGLRRHMLSDAQESRLQQQGQVDCAYTTVGSQRLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQLI
QQDNGLILVTGATGSGKSTTLSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDPDI
ILLGELRDLETIRLALTAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAASLRGVITQKLCRQNGGGRIAV
FEILTQTTAVSHLIREGKTYQLPTVIQAGGQWGMQTFEQSIAQRQKQGVLAINH

Sequences:

>Translated_374_residues
MDFTSLNNQHSDLNNPVFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHLCTGFHPVLRIDGELKTFTDW
PKVTAGWLNGLRRHMLSDAQESRLQQQGQVDCAYTTVGSQRLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQLI
QQDNGLILVTGATGSGKSTTLSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDPDI
ILLGELRDLETIRLALTAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAASLRGVITQKLCRQNGGGRIAV
FEILTQTTAVSHLIREGKTYQLPTVIQAGGQWGMQTFEQSIAQRQKQGVLAINH
>Mature_374_residues
MDFTSLNNQHSDLNNPVFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHLCTGFHPVLRIDGELKTFTDW
PKVTAGWLNGLRRHMLSDAQESRLQQQGQVDCAYTTVGSQRLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQLI
QQDNGLILVTGATGSGKSTTLSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDPDI
ILLGELRDLETIRLALTAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAASLRGVITQKLCRQNGGGRIAV
FEILTQTTAVSHLIREGKTYQLPTVIQAGGQWGMQTFEQSIAQRQKQGVLAINH

Specific function: Unknown

COG id: COG2805

COG function: function code NU; Tfp pilus assembly protein, pilus retraction ATPase PilT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI87082188, Length=325, Percent_Identity=56.3076923076923, Blast_Score=349, Evalue=1e-97,
Organism=Escherichia coli, GI1789723, Length=278, Percent_Identity=36.3309352517986, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1786296, Length=277, Percent_Identity=34.2960288808664, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006321
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 41291; Mature: 41291

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFTSLNNQHSDLNNPVFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHL
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE
CTGFHPVLRIDGELKTFTDWPKVTAGWLNGLRRHMLSDAQESRLQQQGQVDCAYTTVGSQ
ECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
RLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQLIQQDNGLILVTGATGSGKSTT
HHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCHHH
LSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDPDI
HHHHHHHHHHHHCCEEEEEHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCHHHCCCCE
ILLGELRDLETIRLALTAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAAS
EEECCCCCHHHHHEEEEECCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LRGVITQKLCRQNGGGRIAVFEILTQTTAVSHLIREGKTYQLPTVIQAGGQWGMQTFEQS
HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCEECCHHHHCCCCCCHHHHHHH
IAQRQKQGVLAINH
HHHHHHCCCEEECC
>Mature Secondary Structure
MDFTSLNNQHSDLNNPVFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHL
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE
CTGFHPVLRIDGELKTFTDWPKVTAGWLNGLRRHMLSDAQESRLQQQGQVDCAYTTVGSQ
ECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
RLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQLIQQDNGLILVTGATGSGKSTT
HHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCHHH
LSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDPDI
HHHHHHHHHHHHCCEEEEEHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCHHHCCCCE
ILLGELRDLETIRLALTAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAAS
EEECCCCCHHHHHEEEEECCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LRGVITQKLCRQNGGGRIAVFEILTQTTAVSHLIREGKTYQLPTVIQAGGQWGMQTFEQS
HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCEECCHHHHCCCCCCHHHHHHH
IAQRQKQGVLAINH
HHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]