| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is yadA [H]
Identifier: 51596717
GI number: 51596717
Start: 2823649
End: 2826291
Strand: Reverse
Name: yadA [H]
Synonym: YPTB2394
Alternate gene names: 51596717
Gene position: 2826291-2823649 (Counterclockwise)
Preceding gene: 51596718
Following gene: 51596716
Centisome position: 59.57
GC content: 57.74
Gene sequence:
>2643_bases ATGAAAAGTATCCAAAAGTGTGACTGTAATTATCTGGCCAGATTTGCAGTTTCAGATTCCTTTATCAGAGACAATTCTTT TCGCGGCTTGCTTGCTATTTTTATGGTGACGATATTTGTGCCAGGTACTGCATTTTCTGAACTCTATGTGAACAATGCCA ATGATCCTGGCTGTTATGCCGTTGTGGATGATAATAATCTGAATTTTAAGGGGAGGATCACCGGTATTGTTACTAACCAT ATATATTGTAATACGTTGACTGAGGCGAATCTGAATACCAATGGGGGGCAGCTATTTGTTGGCGGACAAGGCGGGCTCCC AGGGTACGCTCCCACCCCCTGGACAGGGACATTCACGACGGCCGTTGGCACCAGTAATGTCGCCACAGCATACGGCTTTG TCGTTCAAAAAAATGGTGCATTTATCAACGGTGATACCTACGTGCAGGGGGGGTTATTTTTGAACGGTAGGAAAGCCACC AATCTTGCCCCCGCAACGGTTTCATCGACCTCCACCGATGCGGTGGTTGGTAGCCAGCTTTATACGGTGATCCAAGATGG AACCCGCTATTTCCACGCCAACTCAGTGAACCCGCAAGACTCCGTGCCTGCGGGTCAGGATGCTATTGCTGTCGGGCCGG CGACGGTGGTCAATGGTAATAACGGGATTGGTATTGGTAATAGCGCCGTTGTTGGGCCGAGTGCTGTCGGGGGCATTGCA ATTGGCCCCAACACTCAGGCGACCGGTACCGCCAGCACGGCCCTTGGTGCCGGAACGCAGGCGCAGGGGGCACAGTCTTT GGCTCTTGGGGCCGGGGCGGTTACCCGCCAGGTAAACAGTATTGCGTTAGGGGCGTCGTCGGTCACCACGGTGGGCGCTC AGGGCAGCTACAGTGCATACGGACTGCCGACTACGCAGGCGTCGGTGGGGGAAGTGGGCATAGGGACCGCGCAGGGTAAT CGCAAGATCACCGGTGTGGCAGCGGGCTCGGCTGGTTATGATGCGGTCAACGTGACTCAGTTGACTGCTGTTGGTAATAA AGTCGACCAAAATACCGCTGACATTACCAGTTTAGATGGCCGGGTCACCAATGTTGAGGGGGGGATGACCAGCATCACCA ACGGGGGCGGTATAAAGTACTTCCACACTCATTCCACCGAACCTGACTCGGTGGCCAGCGGCAGTGATTCGGTGGCGATC GGACCGAATGCGCAGGCGTCCGGTACCACATCGATAGCCCTTGGGGCCGGGTCGACAGCGCAGGGAGCACAGTCTCTGGC ATTGGGGGCGGGAGCGGCTGCCAGCCAGGCAAACAGTATTGCGTTAGGGGCGTCATCGGTCACCACGGTCGGTGCTGAGA GCAACTACAGTGCGTACGGACTGACAGCTTCCCAAACGTCGGTGGGCGAGGTGGGGGTGGGCACGGCACAGGGGAATCGC AAGATCACCGGTGTGGCAGCCGGTTCGGCTGATTATGATGCGGTCAATGTCGCGCAATTGACCGCTGTTGGTGACAAGGT CGATCAGAATACCGCTGACATCACCAGTTTAGACGGCCGGGTCACCAATGTTGAGGGGGAGATGACCAGCATCACCAACG GGGGCGGCGTGAAATACTTCCACACCCACTCCACCGAGCCTGATTCGGTGGCCAGCGGCAGTGATTCGGTGGCGATCGGA CCGAATGCGCAGGCGTCAGGTACGGCTTCGGTGGCCTCCGGCAAGGGTACGCTGGCCTCCGGTAACGGTGCGGTGGCGAT AGGTGATGCAGCAAGCGTCAGCGCAGAGGGCAGTGTTGCCCTGGGGCAGGGTTCCGCTGACAACGGGCGCGGTGCAGAGA GCTACACCGGCAAGTACTCCACTGCGGATAACACCACCTCAGGTACGGTGTCGGTGGGCAATGCGGCAACCGGAGAGACC CGGACGGTCAGCAACGTTGCCGACGGGCGAGAGGCCATGGATGCAGTCAATCTGCGGCAACTCGATGGTGCAATGGCGGC GGTGGGTGACACCGTATCAGGGTTGCAGAACGGCACTGACGGGATGTTCCAGGTGAACAACAACAGCGGTCAGGCCAAGC CTTCGGCCACCGGAACTGATGCGATGGCGGGGGGGGCAGGCTCCGTGGCGTCTGGCAGCCACAGTACCGCGATGGGTACG GGCAGCAAGGCGACGGCGGCAAACAGCACCGCGCTGGGGGCCAACTCAGTGGCGGATCGTGAAAACAGTGTCTCGGTGGG GTCAGTGGGTAATGAACGGCAGCTCACTAATATTGCTGTGGGGACTCAGGGCACTGATGCGGTGAATCTGGATCAACTCA ACCATAGCATGTCGAATGTCACCAACGACGCCAATGCTTATACAGACCAGCGCTATTCTGCACTTAAAGAAGATCTGAAA AAACAGGATAGTACGTTAAGTGCGGGGATCGCCGGTGCCATGGCGATGGCGAGCCTGACTCAACCCTATACGCCGGGTGC CAGCATGGCGACCATTGGTGCGGCCAGCTATCGGGGCCAGTCGGCGCTGTCGGTGGGGGTGTCGAGTATTTCTGACAGTG GGCGATGGGTCAGCAAATTGCAGGCCTCCTCTAATACACAAGGCGATATGGGGGTTGGTGTCGGCGTCGGTTATCAATGG TAA
Upstream 100 bases:
>100_bases CTTCGATTCACTCAGTGCCATACAGGAGCGGGTTTGAACGTCTTTGCTTAATAATTTGTCACCAATGTCAAAAGGTGAAC AAGAATAAAATGGGGATGGT
Downstream 100 bases:
>100_bases AGAAAGGCCAACACTGAATATTGTTTAATAATCATTAACGGGTTGTGCGATTTTTTGCACAGCCCGATTCTACTTCTTAG GGATTAAAAGGCAGCACCCA
Product: surface protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 880; Mature: 880
Protein sequence:
>880_residues MKSIQKCDCNYLARFAVSDSFIRDNSFRGLLAIFMVTIFVPGTAFSELYVNNANDPGCYAVVDDNNLNFKGRITGIVTNH IYCNTLTEANLNTNGGQLFVGGQGGLPGYAPTPWTGTFTTAVGTSNVATAYGFVVQKNGAFINGDTYVQGGLFLNGRKAT NLAPATVSSTSTDAVVGSQLYTVIQDGTRYFHANSVNPQDSVPAGQDAIAVGPATVVNGNNGIGIGNSAVVGPSAVGGIA IGPNTQATGTASTALGAGTQAQGAQSLALGAGAVTRQVNSIALGASSVTTVGAQGSYSAYGLPTTQASVGEVGIGTAQGN RKITGVAAGSAGYDAVNVTQLTAVGNKVDQNTADITSLDGRVTNVEGGMTSITNGGGIKYFHTHSTEPDSVASGSDSVAI GPNAQASGTTSIALGAGSTAQGAQSLALGAGAAASQANSIALGASSVTTVGAESNYSAYGLTASQTSVGEVGVGTAQGNR KITGVAAGSADYDAVNVAQLTAVGDKVDQNTADITSLDGRVTNVEGEMTSITNGGGVKYFHTHSTEPDSVASGSDSVAIG PNAQASGTASVASGKGTLASGNGAVAIGDAASVSAEGSVALGQGSADNGRGAESYTGKYSTADNTTSGTVSVGNAATGET RTVSNVADGREAMDAVNLRQLDGAMAAVGDTVSGLQNGTDGMFQVNNNSGQAKPSATGTDAMAGGAGSVASGSHSTAMGT GSKATAANSTALGANSVADRENSVSVGSVGNERQLTNIAVGTQGTDAVNLDQLNHSMSNVTNDANAYTDQRYSALKEDLK KQDSTLSAGIAGAMAMASLTQPYTPGASMATIGAASYRGQSALSVGVSSISDSGRWVSKLQASSNTQGDMGVGVGVGYQW
Sequences:
>Translated_880_residues MKSIQKCDCNYLARFAVSDSFIRDNSFRGLLAIFMVTIFVPGTAFSELYVNNANDPGCYAVVDDNNLNFKGRITGIVTNH IYCNTLTEANLNTNGGQLFVGGQGGLPGYAPTPWTGTFTTAVGTSNVATAYGFVVQKNGAFINGDTYVQGGLFLNGRKAT NLAPATVSSTSTDAVVGSQLYTVIQDGTRYFHANSVNPQDSVPAGQDAIAVGPATVVNGNNGIGIGNSAVVGPSAVGGIA IGPNTQATGTASTALGAGTQAQGAQSLALGAGAVTRQVNSIALGASSVTTVGAQGSYSAYGLPTTQASVGEVGIGTAQGN RKITGVAAGSAGYDAVNVTQLTAVGNKVDQNTADITSLDGRVTNVEGGMTSITNGGGIKYFHTHSTEPDSVASGSDSVAI GPNAQASGTTSIALGAGSTAQGAQSLALGAGAAASQANSIALGASSVTTVGAESNYSAYGLTASQTSVGEVGVGTAQGNR KITGVAAGSADYDAVNVAQLTAVGDKVDQNTADITSLDGRVTNVEGEMTSITNGGGVKYFHTHSTEPDSVASGSDSVAIG PNAQASGTASVASGKGTLASGNGAVAIGDAASVSAEGSVALGQGSADNGRGAESYTGKYSTADNTTSGTVSVGNAATGET RTVSNVADGREAMDAVNLRQLDGAMAAVGDTVSGLQNGTDGMFQVNNNSGQAKPSATGTDAMAGGAGSVASGSHSTAMGT GSKATAANSTALGANSVADRENSVSVGSVGNERQLTNIAVGTQGTDAVNLDQLNHSMSNVTNDANAYTDQRYSALKEDLK KQDSTLSAGIAGAMAMASLTQPYTPGASMATIGAASYRGQSALSVGVSSISDSGRWVSKLQASSNTQGDMGVGVGVGYQW >Mature_880_residues MKSIQKCDCNYLARFAVSDSFIRDNSFRGLLAIFMVTIFVPGTAFSELYVNNANDPGCYAVVDDNNLNFKGRITGIVTNH IYCNTLTEANLNTNGGQLFVGGQGGLPGYAPTPWTGTFTTAVGTSNVATAYGFVVQKNGAFINGDTYVQGGLFLNGRKAT NLAPATVSSTSTDAVVGSQLYTVIQDGTRYFHANSVNPQDSVPAGQDAIAVGPATVVNGNNGIGIGNSAVVGPSAVGGIA IGPNTQATGTASTALGAGTQAQGAQSLALGAGAVTRQVNSIALGASSVTTVGAQGSYSAYGLPTTQASVGEVGIGTAQGN RKITGVAAGSAGYDAVNVTQLTAVGNKVDQNTADITSLDGRVTNVEGGMTSITNGGGIKYFHTHSTEPDSVASGSDSVAI GPNAQASGTTSIALGAGSTAQGAQSLALGAGAAASQANSIALGASSVTTVGAESNYSAYGLTASQTSVGEVGVGTAQGNR KITGVAAGSADYDAVNVAQLTAVGDKVDQNTADITSLDGRVTNVEGEMTSITNGGGVKYFHTHSTEPDSVASGSDSVAIG PNAQASGTASVASGKGTLASGNGAVAIGDAASVSAEGSVALGQGSADNGRGAESYTGKYSTADNTTSGTVSVGNAATGET RTVSNVADGREAMDAVNLRQLDGAMAAVGDTVSGLQNGTDGMFQVNNNSGQAKPSATGTDAMAGGAGSVASGSHSTAMGT GSKATAANSTALGANSVADRENSVSVGSVGNERQLTNIAVGTQGTDAVNLDQLNHSMSNVTNDANAYTDQRYSALKEDLK KQDSTLSAGIAGAMAMASLTQPYTPGASMATIGAASYRGQSALSVGVSSISDSGRWVSKLQASSNTQGDMGVGVGVGYQW
Specific function: Collagen-binding outer membrane protein forming a fibrillar matrix on the bacterial cell surface. Promotes attachment to eukaryotic cells and after invasion, is the major adhesin in infected tissue. Constitutes an alternative uptake pathway under conditio
COG id: COG5295
COG function: function code UW; Autotransporter adhesin
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the autotransporter-2 (TC 1.B.40) / oligomeric coiled-coil adhesin (Oca) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008640 - InterPro: IPR008635 - InterPro: IPR008126 - InterPro: IPR005594 [H]
Pfam domain/function: PF05658 Hep_Hag; PF05662 HIM; PF03895 YadA [H]
EC number: NA
Molecular weight: Translated: 86856; Mature: 86856
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSIQKCDCNYLARFAVSDSFIRDNSFRGLLAIFMVTIFVPGTAFSELYVNNANDPGCYA CCCHHHCCHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEE VVDDNNLNFKGRITGIVTNHIYCNTLTEANLNTNGGQLFVGGQGGLPGYAPTPWTGTFTT EECCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEE AVGTSNVATAYGFVVQKNGAFINGDTYVQGGLFLNGRKATNLAPATVSSTSTDAVVGSQL ECCCCCCEEEEEEEEECCCCEECCCEEEECCEEECCCCCCCCCCCEECCCCCCHHHHHHH YTVIQDGTRYFHANSVNPQDSVPAGQDAIAVGPATVVNGNNGIGIGNSAVVGPSAVGGIA HHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCEECCCCCCCEE IGPNTQATGTASTALGAGTQAQGAQSLALGAGAVTRQVNSIALGASSVTTVGAQGSYSAY ECCCCCCCCCCHHHCCCCCCCCCCCCEECCCCHHHHHHHHEEECCCCEEEECCCCCCCCC GLPTTQASVGEVGIGTAQGNRKITGVAAGSAGYDAVNVTQLTAVGNKVDQNTADITSLDG CCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCEEECCC RVTNVEGGMTSITNGGGIKYFHTHSTEPDSVASGSDSVAIGPNAQASGTTSIALGAGSTA EEEEECCCCEEECCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCC QGAQSLALGAGAAASQANSIALGASSVTTVGAESNYSAYGLTASQTSVGEVGVGTAQGNR CCCHHHEECCCCCCCCCCEEEECCCCEEEECCCCCCCEEEEECCCCCCCCCCCEECCCCE KITGVAAGSADYDAVNVAQLTAVGDKVDQNTADITSLDGRVTNVEGEMTSITNGGGVKYF EEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCEEEECCCCEEEECCCCCEEEE HTHSTEPDSVASGSDSVAIGPNAQASGTASVASGKGTLASGNGAVAIGDAASVSAEGSVA ECCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCEEECCCCCEEECCCCCCCCCCCEE LGQGSADNGRGAESYTGKYSTADNTTSGTVSVGNAATGETRTVSNVADGREAMDAVNLRQ ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEHHHHHCCHHHHHHHHHHH LDGAMAAVGDTVSGLQNGTDGMFQVNNNSGQAKPSATGTDAMAGGAGSVASGSHSTAMGT HCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC GSKATAANSTALGANSVADRENSVSVGSVGNERQLTNIAVGTQGTDAVNLDQLNHSMSNV CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHHC TNDANAYTDQRYSALKEDLKKQDSTLSAGIAGAMAMASLTQPYTPGASMATIGAASYRGQ CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHCCCC SALSVGVSSISDSGRWVSKLQASSNTQGDMGVGVGVGYQW HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEECCCCCC >Mature Secondary Structure MKSIQKCDCNYLARFAVSDSFIRDNSFRGLLAIFMVTIFVPGTAFSELYVNNANDPGCYA CCCHHHCCHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEE VVDDNNLNFKGRITGIVTNHIYCNTLTEANLNTNGGQLFVGGQGGLPGYAPTPWTGTFTT EECCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEE AVGTSNVATAYGFVVQKNGAFINGDTYVQGGLFLNGRKATNLAPATVSSTSTDAVVGSQL ECCCCCCEEEEEEEEECCCCEECCCEEEECCEEECCCCCCCCCCCEECCCCCCHHHHHHH YTVIQDGTRYFHANSVNPQDSVPAGQDAIAVGPATVVNGNNGIGIGNSAVVGPSAVGGIA HHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCEECCCCCCCEE IGPNTQATGTASTALGAGTQAQGAQSLALGAGAVTRQVNSIALGASSVTTVGAQGSYSAY ECCCCCCCCCCHHHCCCCCCCCCCCCEECCCCHHHHHHHHEEECCCCEEEECCCCCCCCC GLPTTQASVGEVGIGTAQGNRKITGVAAGSAGYDAVNVTQLTAVGNKVDQNTADITSLDG CCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCEEECCC RVTNVEGGMTSITNGGGIKYFHTHSTEPDSVASGSDSVAIGPNAQASGTTSIALGAGSTA EEEEECCCCEEECCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCC QGAQSLALGAGAAASQANSIALGASSVTTVGAESNYSAYGLTASQTSVGEVGVGTAQGNR CCCHHHEECCCCCCCCCCEEEECCCCEEEECCCCCCCEEEEECCCCCCCCCCCEECCCCE KITGVAAGSADYDAVNVAQLTAVGDKVDQNTADITSLDGRVTNVEGEMTSITNGGGVKYF EEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCEEEECCCCEEEECCCCCEEEE HTHSTEPDSVASGSDSVAIGPNAQASGTASVASGKGTLASGNGAVAIGDAASVSAEGSVA ECCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCEEECCCCCEEECCCCCCCCCCCEE LGQGSADNGRGAESYTGKYSTADNTTSGTVSVGNAATGETRTVSNVADGREAMDAVNLRQ ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEHHHHHCCHHHHHHHHHHH LDGAMAAVGDTVSGLQNGTDGMFQVNNNSGQAKPSATGTDAMAGGAGSVASGSHSTAMGT HCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC GSKATAANSTALGANSVADRENSVSVGSVGNERQLTNIAVGTQGTDAVNLDQLNHSMSNV CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHHC TNDANAYTDQRYSALKEDLKKQDSTLSAGIAGAMAMASLTQPYTPGASMATIGAASYRGQ CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHCCCC SALSVGVSSISDSGRWVSKLQASSNTQGDMGVGVGVGYQW HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3043229; 2761389; 2592347; 1548243; 12183532 [H]